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(-) Description

Title :  COMPLEX STRUCTURE OF ABSCISIC ACID RECEPTOR PYL3 WITH (-)-ABA
 
Authors :  X. Zhang, G. Wang, Z. Chen
Date :  24 Feb 13  (Deposition) - 24 Jul 13  (Release) - 24 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Abscisic Acid Receptor, Pp2C, Hormone Receptor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Zhang, L. Jiang, G. Wang, L. Yu, Q. Zhang, Q. Xin, W. Wu, Z. Gong, Z. Che
Structural Insights Into The Abscisic Acid Stereospecificit By The Aba Receptors Pyr/Pyl/Rcar
Plos One V. 8 67477 2013
PubMed-ID: 23844015  |  Reference-DOI: 10.1371/JOURNAL.PONE.0067477

(-) Compounds

Molecule 1 - ABSCISIC ACID RECEPTOR PYL3
    Chains: A, B, C, D
    Engineered: YES
    Expression System: CRICETULUS GRISEUS
    Expression System Common: CHINESE HAMSTER
    Expression System Plasmid: PGEX 4T-2
    Expression System Strain: ROSETTA 2 (DE3) CELLS
    Expression System Taxid: 10029
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 21-209
    Gene: PYL3
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: PYR1-LIKE PROTEIN 3, REGULATORY COMPONENTS OF ABA RECEPTOR 13

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1A9S4Ligand/Ion(2Z,4E)-5-[(1R)-1-HYDROXY-2,6,6-TRIMETHYL-4-OXOCYCLOHEX-2-EN-1-YL]-3-METHYLPENTA-2,4-DIENOIC ACID
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1A9S2Ligand/Ion(2Z,4E)-5-[(1R)-1-HYDROXY-2,6,6-TRIMETHYL-4-OXOCYCLOHEX-2-EN-1-YL]-3-METHYLPENTA-2,4-DIENOIC ACID
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1A9S2Ligand/Ion(2Z,4E)-5-[(1R)-1-HYDROXY-2,6,6-TRIMETHYL-4-OXOCYCLOHEX-2-EN-1-YL]-3-METHYLPENTA-2,4-DIENOIC ACID

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:79 , VAL A:107 , ALA A:113 , SER A:116 , PHE A:132 , HIS A:139 , LEU A:141 , TYR A:144BINDING SITE FOR RESIDUE A9S A 301
2AC2SOFTWARELYS B:79 , ALA B:113 , SER B:116 , LEU B:141 , TYR B:144 , VAL B:189 , ASN B:196BINDING SITE FOR RESIDUE A9S B 301
3AC3SOFTWARELYS C:79 , VAL C:107 , SER C:116 , HIS C:139 , LEU C:141 , TYR C:144 , VAL C:192BINDING SITE FOR RESIDUE A9S C 301
4AC4SOFTWARELYS D:79 , VAL D:107 , ALA D:113 , SER D:116 , HIS D:139 , LEU D:141 , TYR D:144 , GLU D:170 , ASN D:196BINDING SITE FOR RESIDUE A9S D 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JDA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JDA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JDA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JDA)

(-) Exons   (0, 0)

(no "Exon" information available for 4JDA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh.......eeeeeeeeee..hhhhhhhhhh...hhhhh...eeeeeeee........eeeeee.......eeeeeeeeee....eeeeeeee........eeeeeeeeeee...eeeeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jda A  23 YGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVLKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVISTAS 207
                                    32        42        52        62        72        82       |96       106       116       126       136       146       156|      170       180       190       200       
                                                                                              90|                                                          156|                                              
                                                                                               95                                                           161                                              


Chain B from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh.......eeeeeeeeee..hhhhhhhhhh...hhhhh...eeeeeeee.......eeeeee.......eeeeeeeeee....eeeeeeee........eeeeeeeee...eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jda B  23 YGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVISTA 206
                                    32        42        52        62        72        82       |97       107       117       127       137       147       165       175       185       195       205 
                                                                                              90|                                                        155|                                          
                                                                                               96                                                         164                                          


Chain C from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh.......eeeeeeeeee..hhhhhhhhhh...hhhhh...eee..eee.......eeeeee.......eeeeeeeeee....eeeeeeee........eeeeeeeee....eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jda C  23 YGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVVRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVISTAS 207
                                    32        42        52        62        72        82       |97       107       117       127       137       147       164       174       184       194       204   
                                                                                              90|                                                        155|                                            
                                                                                               96                                                         163                                            


Chain D from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh.......eeeeeeeeee..hhhhhhhhhh...hhhhh...eeeeee..........eeeeee.......eeeeeeeeee....eeeeeeee........eeeeeeeee....eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4jda D  23 YGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRSVTSVNEFVKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVISTAS 207
                                    32        42        52        62        72        82        96       106       116       126       136       146       163       173       183       193       203    
                                                                                               91|                                                       154|                                             
                                                                                                96                                                        162
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JDA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JDA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JDA)

(-) Gene Ontology  (12, 12)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PYL3_ARATH | Q9SSM7: 3klx 3oji 4ds8 4dsb 4dsc 5jo1 5jo2

(-) Related Entries Specified in the PDB File

3kl1 4dsc