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(-) Description

Title :  STRUCTURE OF THE INOSITOL-1-PHOSPHATE CTP TRANSFERASE FROM T. MARITIMA.
 
Authors :  B. Stec
Date :  22 Feb 13  (Deposition) - 18 Sep 13  (Release) - 18 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha/Beta Motif Of Sugar Nucleotidyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  O. V. Kurnasov, H. J. Luk, M. F. Roberts, B. Stec
Structure Of The Inositol-1-Phosphate Cytidylyltransferase From Thermotoga Maritima.
Acta Crystallogr. , Sect. D V. 69 1808 2013
PubMed-ID: 23999304  |  Reference-DOI: 10.1107/S0907444913015278

(-) Compounds

Molecule 1 - NUCLEOTIDYL TRANSFERASE
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneTHEMADRAFT_0946, TM1418A
    Organism ScientificTHERMOTOGA MARITIMA
    Organism Taxid243274
    StrainATCC 43589 / MSB8 / DSM 3109 / JCM 10099

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 15)

Asymmetric/Biological Unit (5, 15)
No.NameCountTypeFull Name
11KH1Ligand/IonARSENORIBOSE
2CL1Ligand/IonCHLORIDE ION
3GOL2Ligand/IonGLYCEROL
4NA8Ligand/IonSODIUM ION
5PO43Ligand/IonPHOSPHATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:85 , CYS A:105 , LYS A:141 , SER A:143 , LYS A:157 , ASP A:166 , GLY A:168 , PHE A:170 , SER A:190 , LEU A:191 , TYR A:192 , GLU A:217 , NA A:311 , HOH A:420 , HOH A:455 , HOH A:576BINDING SITE FOR RESIDUE 1KH A 301
02AC2SOFTWARESER A:190 , LEU A:191 , TYR A:192 , NA A:303BINDING SITE FOR RESIDUE CL A 302
03AC3SOFTWAREASP A:166 , PHE A:170 , LEU A:191 , TYR A:192 , CL A:302BINDING SITE FOR RESIDUE NA A 303
04AC4SOFTWARESER A:120 , ASP A:122 , LYS A:127 , ASN A:150 , VAL A:207 , PHE A:208 , HOH A:526 , HOH A:623BINDING SITE FOR RESIDUE PO4 A 304
05AC5SOFTWAREARG A:133 , ASP A:135 , HIS A:193 , GLN A:196 , LYS A:197 , ASP A:200 , LYS A:227 , NA A:307 , GOL A:313 , HOH A:481BINDING SITE FOR RESIDUE PO4 A 305
06AC6SOFTWAREGLY A:156 , LYS A:157 , ARG A:158 , TYR A:192 , HOH A:521BINDING SITE FOR RESIDUE PO4 A 306
07AC7SOFTWAREARG A:133 , ASP A:135 , LYS A:197 , ASP A:200 , PO4 A:305BINDING SITE FOR RESIDUE NA A 307
08AC8SOFTWARESER A:131 , ARG A:133 , PHE A:210 , GLY A:211 , ALA A:213 , TRP A:215BINDING SITE FOR RESIDUE NA A 308
09AC9SOFTWAREGLU A:99 , LYS A:175 , HOH A:421 , HOH A:529BINDING SITE FOR RESIDUE NA A 309
10BC1SOFTWAREASN A:163 , HOH A:418 , HOH A:468 , HOH A:482BINDING SITE FOR RESIDUE NA A 310
11BC2SOFTWARESER A:190 , 1KH A:301 , HOH A:498BINDING SITE FOR RESIDUE NA A 311
12BC3SOFTWARESER A:190 , TYR A:192 , HOH A:419 , HOH A:546 , HOH A:631BINDING SITE FOR RESIDUE NA A 312
13BC4SOFTWAREPHE A:183 , SER A:184 , GLU A:187 , ILE A:189 , HIS A:193 , LYS A:197 , LYS A:227 , PO4 A:305 , HOH A:594BINDING SITE FOR RESIDUE GOL A 313
14BC5SOFTWARELEU A:7 , SER A:9 , GLY A:10 , VAL A:25 , ASN A:85 , CYS A:105 , GLY A:106 , ASP A:107 , HOH A:408 , HOH A:437BINDING SITE FOR RESIDUE GOL A 314
15BC6SOFTWAREASP A:107 , ASP A:219 , HOH A:475 , HOH A:523 , HOH A:550BINDING SITE FOR RESIDUE NA A 315

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:32 -A:241

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee...hhhhhhhhh..hhhh.ee..ee.hhhhhhhhhh....eeeeeee..hhhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhh...eeeeee..ee.hhhhhhhhh......eeeeee............eeeee..eeeeee.......eeeeeeeeee.hhhhhhhhh......hhhhhhhhhhhh...eeeee......ee..hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jd0 A  -3 FQGAMREAIVLASGAGKRLRSVTGDVPKVFYRFDGCELVKYPMISLMKNGVERFVLVVSEGYRDLGEKVLNDLGVEGIVVENKKVELGNAYSFFLSEPYVESEKFFLSCGDSLFPPSALKSAFSEDEFHIKLGVSKRSDLIDPEKASKVLVNENRIVKIGKRIDQYNYFDTGVFVMTKKVYSLKESFSWTEDISLYHVLQKAVDTGMIVKVFDFGNALWTEIDSPADLNSKVYELMSKIKEGVAC 241
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236     

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JD0)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JD0)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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