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(-) Description

Title :  CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF HIV-1 CAPSID IN COMPLEX WITH INHIBITOR BI-1
 
Authors :  C. T. Lemke
Date :  15 Feb 13  (Deposition) - 10 Jul 13  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.74
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Protein Capsid, Viral Protein, Viral Protein-Viral Protein Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Lamorte, S. Titolo, C. T. Lemke, N. Goudreau, J. F. Mercier, E. Wardrop, V. B. Shah, U. K. Von Schwedler, C. Langelier, S. S. Banik, C. Aiken, W. I. Sundquist, S. W. Mason
Discovery Of Novel Small-Molecule Hiv-1 Replication Inhibitors That Stabilize Capsid Complexes.
Antimicrob. Agents Chemother. V. 57 4622 2013
PubMed-ID: 23817385  |  Reference-DOI: 10.1128/AAC.00985-13

(-) Compounds

Molecule 1 - GAG PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: N-TERMINAL DOMAIN,UNP RESIDUES 133-278
    Gene: GAG
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
10OE1Ligand/Ion4-{2-[5-(3-CHLOROPHENYL)-1H-PYRAZOL-4-YL]-1-[3-(1H-IMIDAZOL-1-YL)PROPYL]-1H-BENZIMIDAZOL-5-YL}BENZOICACID
21JR1Ligand/Ion(4S)-3-PHENYL-4-(PYRIDIN-3-YL)-4,5-DIHYDROPYRROLO[3,4-C]PYRAZOL-6(2H)-ONE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:18 , MET A:68 , TRP A:80 , MET A:96 , TRP A:117 , HIS A:120 , PRO A:122 , ILE A:124 , PRO A:125 , ARG A:132 , ARG A:143 , MET A:144 , TYR A:145 , HOH A:302 , HOH A:339 , HOH A:356 , HOH A:358 , HOH A:359 , HOH A:379 , HOH A:415BINDING SITE FOR RESIDUE 0OE A 201
2AC2SOFTWAREASN A:53 , LEU A:56 , ASN A:57 , MET A:66 , LYS A:70 , ALA A:105 , GLY A:106 , THR A:107 , TYR A:130 , HOH A:431 , HOH A:444BINDING SITE FOR RESIDUE 1JR A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J93)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asn A:121 -Pro A:122

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J93)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J93)

(-) Exons   (0, 0)

(no "Exon" information available for 4J93)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains d4j93a_ A: HIV-1 capsid protein                                                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eee...hhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...............hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j93 A   1 PIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYS 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J93)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J93)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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  4j93
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  Q79791_9HIV1 | Q79791
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q79791_9HIV1 | Q79791: 4e91 4e92 4inb
UniProtKB/TrEMBL
        Q79791_9HIV1 | Q79791: 2pxr 3j34 3j3q 3j3y 3j4f

(-) Related Entries Specified in the PDB File

4e91 THE SAME PROTEIN IN COMPLEX WITH AN UNRELATED INHIBITOR
4e92 THE SAME PROTEIN IN COMPLEX WITH AN UNRELATED INHIBITOR