4J7Q - JenaLib

Title :   CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE SFH3 COMPLEXED WITH PHOSPHATIDYLINOSITOL

Authors :   H. Yang, Y. J. Im

Date :   14 Feb 13 (Deposition) - 03 Jul 13 (Release) - 03 Jul 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.55

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (1x)

Keywords :   Sec14 Scaffold, Lipid Transport, Phosphatidylinositol (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Yang, J. Tong, T. A. Leonard, Y. J. Im
Structural Determinants For Phosphatidylinositol Recognitio By Sfh3 And Substrate-Induced Dimer-Monomer Transition During Lipid Transfer Cycles.
Febs Lett. V. 587 1610 2013
PubMed-ID: 23603387 | Reference-DOI: 10.1016/J.FEBSLET.2013.04.009

Compounds

Molecule 1 - PHOSPHATIDYLINOSITOL TRANSFER PROTEIN PDR16
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PST39
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 15-345
	Gene	:	N1158, PDR16, SFH3, YNL231C
	Organism Common	:	BAKER'S YEAST
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	559292
	Strain	:	ATCC 204508 / S288C
	Synonym	:	PITP, PLEIOTROPIC DRUG RESISTANCE PROTEIN 16, SEC14 HOMOLOG 3

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 2)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	B7N	2	Ligand/Ion	(1R)-2-{[(S)-HYDROXY{[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL]OXY}-1-[(OCTADECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	B7N	1	Ligand/Ion	(1R)-2-{[(S)-HYDROXY{[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL]OXY}-1-[(OCTADECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	B7N	1	Ligand/Ion	(1R)-2-{[(S)-HYDROXY{[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL]OXY}-1-[(OCTADECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	B7N	2	Ligand/Ion	(1R)-2-{[(S)-HYDROXY{[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL]OXY}-1-[(OCTADECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ALA A:96 , ARG A:107 , GLN A:165 , GLN A:173 , LEU A:177 , LEU A:197 , VAL A:225 , LEU A:229 , TYR A:233 , GLU A:235 , ARG A:236 , LEU A:237 , LEU A:242 , ALA A:249 , HOH A:538 , HOH A:557 , HOH A:595 , HOH A:613 , TRP B:247 , PHE B:252 , LEU B:255 , HOH B:669	BINDING SITE FOR RESIDUE B7N A 401
2	AC2	SOFTWARE	LEU A:248 , PHE A:252 , LEU A:255 , ILE A:256 , ALA B:96 , LEU B:160 , GLN B:173 , VAL B:174 , LEU B:197 , PHE B:201 , VAL B:225 , LEU B:229 , TYR B:233 , GLU B:235 , ARG B:236 , LEU B:237 , LYS B:267 , HOH B:512 , HOH B:571 , HOH B:573 , HOH B:636 , HOH B:647 , HOH B:657	BINDING SITE FOR RESIDUE B7N B 401

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:322
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...................hhhhhhhhhhhhhhhhh...eee..........eee.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh....hhhhh...hhhhhhhhhh...eeeeee.....eeeee.hhhh....hhhhhhhhhhhhhhhhhh.......eeeeee............hhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhhh.ee...hhhhh.hhhhhhhhhh..eee..hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j7q A  16 KNLINIDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNPDLKVYTSEKNKSEDDLKPLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGYENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVPGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEPFVKYVPKNELDSLYGGDLKFKYNHDVYWPALVETAREKRDHYFKRFQSFGGIVGLSEVDLRGTHEKLLYPVK 345
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205     ||223       233       243       253       263       273       283       293       303       313       323       333       343  
                                                                                                                                                                                                                             211|                                                                                                                             
                                                                                                                                                                                                                              220

Chain B from PDB  Type:PROTEIN  Length:322
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...................hhhhhhhhhhhhhhhhh...eee..........eee.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh....hhhhh...hhhhhhhhhh...eeeeee.....eeeee.hhhh....hhhhhhhhhhhhhhhhhh.......eeeeee.............hhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhhh.ee...hhhhh.hhhhhhhhhh..eee..hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j7q B  16 KNLINIDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNPDLKVYTSEKNKSEDDLKPLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGYENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVPGGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEPFVKYVPKNELDSLYGGDLKFKYNHDVYWPALVETAREKRDHYFKRFQSFGGIVGLSEVDLRGTHEKLLYPV 344
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205      |222       232       242       252       262       272       282       292       302       312       322       332       342  
                                                                                                                                                                                                                              212|                                                                                                                            
                                                                                                                                                                                                                               220

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (17, 17)

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