Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS TRANSHYDROGENASE HETEROTRIMERIC COMPLEX OF THE ALPHA1 SUBUNIT DIMER WITH THE NADP BINDING DOMAIN (DOMAIN III) OF THE BETA SUBUNIT IN P2(1)
 
Authors :  M. Yamaguchi, J. Leung, L. A. Schurig Briccio, R. B. Gennis, C. D. Stout
Date :  02 Feb 13  (Deposition) - 05 Feb 14  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.37
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Soluble Components Of Nicotinamide Nucleotide Transhydrogenase, Complex Of Alpha1 Subunit Dimer With Domain Iii Of Beta Subunit, Alpha1 Binds Nad(H) Domain Iii Binds Nadp(H), Domain Iii Binds To Alpha1, Nad Bound To Alpha1, Nadp Bound To Domain Iii, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Yamaguchi, J. Leung, L. A. Schurig Briccio, R. B. Gennis, C. D. Stou
Crystal Structure Analysis Of Thermus Thermophilus Transhydrogenase Soluble Domains
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NAD/NADP TRANSHYDROGENASE ALPHA SUBUNIT 1
    Chains: A, B, D, E
    EC Number: 1.6.1.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21A
    Expression System Strain: BL21(DE3) ACRAB-
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TT_C1780
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 262724
    Strain: HB27 / ATCC BAA-163 / DSM 7039
 
Molecule 2 - NAD(P) TRANSHYDROGENASE SUBUNIT BETA
    Chains: C, F
    EC Number: 1.6.1.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21A
    Expression System Strain: BL21(DE3) ACRAB-
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: DOMAIN III (UNP RESIDUES 266-450)
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 262724
    Strain: HB27 / ATCC BAA-163 / DSM 7039
    Synonym: NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT BETA

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2NAD1Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 2 (3, 5)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2NAD1Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:146 , ARG A:149 , LEU A:150 , VAL A:300 , HOH A:529 , ARG B:149BINDING SITE FOR RESIDUE GOL A 401
2AC2SOFTWAREARG B:122 , GLY B:174 , VAL B:175 , GLY B:176 , VAL B:177 , TYR B:196 , ASP B:197 , ARG B:199 , THR B:255 , ALA B:256 , GLN B:257 , LEU B:266 , HOH B:629BINDING SITE FOR RESIDUE NAD B 500
3AC3SOFTWAREGLN A:127 , GLY C:300 , TYR C:301 , GLY C:302 , SER C:306 , VAL C:333 , ALA C:334 , GLY C:335 , ARG C:336 , MET C:337 , PRO C:338 , GLY C:375 , ALA C:376 , ASN C:377 , ASP C:378 , VAL C:379 , LYS C:409 , ARG C:410 , GLY C:411 , GLN C:412 , GLY C:413 , GLY C:415 , PHE C:416 , ASP C:435 , ALA C:436BINDING SITE FOR RESIDUE NAP C 500
4AC4SOFTWAREARG D:188 , ARG E:188 , VAL F:343 , ALA F:346 , GLU F:347BINDING SITE FOR RESIDUE GOL D 401
5AC5SOFTWAREGLY A:373 , LYS D:110 , LYS D:111BINDING SITE FOR RESIDUE GOL D 402
6AC6SOFTWARELEU D:85 , GLU D:86 , GLY D:88 , ALA D:89 , LYS D:110 , LYS D:111BINDING SITE FOR RESIDUE GOL D 403
7AC7SOFTWAREARG E:122 , GLY E:174 , VAL E:175 , GLY E:176 , VAL E:177 , ASP E:197 , ARG E:199 , GLN E:205 , THR E:255 , ALA E:256 , LEU E:266 , HOH E:632BINDING SITE FOR RESIDUE NAD E 500
8AC8SOFTWAREGLN D:127 , GLY F:300 , TYR F:301 , GLY F:302 , LEU F:305 , SER F:306 , VAL F:333 , ALA F:334 , GLY F:335 , ARG F:336 , MET F:337 , PRO F:338 , GLY F:375 , ALA F:376 , ASN F:377 , ASP F:378 , VAL F:379 , LYS F:409 , ARG F:410 , GLY F:411 , GLN F:412 , GLY F:413 , GLY F:415 , PHE F:416 , GLY F:434 , ASP F:435 , ALA F:436BINDING SITE FOR RESIDUE NAP F 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J1T)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly E:225 -Tyr E:226

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J1T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J1T)

(-) Exons   (0, 0)

(no "Exon" information available for 4J1T)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:369
                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.............hhhhhhhhhhhh.eeeee...hhhhh.hhhhhhhh..eee..........eee.....hhhhhh......eeee..hhhhhhhhhhhhhhh..eeee.hhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eee..eee...eeeee..hhhhhhhhhhhhhh..eeeee..hhhhhhhhhh...ee...........hhhhhhhhhhhhhhhhhh..eeee.............hhhhhh......eeee.hhhhh..........eeee..eeee...hhhhhhhhhhhhhhhhhhhhhh...ee..ee.....hhhhhhheeee..ee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j1t A  -1 HHMVTVAVPKERAPGERRVALVPEVVARLVKGGARVRVERGAGEGAYHPDEAYQEAGAEVVERGELLKGAHLLFTVQPPPEDLIQALEPGAIVVGFVQPHKNLELVRALQAKKATVIAMELIPRITRAQSMDALSSQATVAGYLAAIHAARLSPRFFPMLTTAAGTIRPAKVMVMGVGVAGLMAIATAKRLGAQVFAYDVRKAALEQALSLGAKPIELPISAERELTEEEKRIQHEALRDHVAGMDVLITTAQVPGRRAPILLTEDMVERLKPGTVVVDLAAESGGNCVLTKPGEVVEVRGVRVYGPLNLPSELSVHASEMYAKNLYNLSSLLIEKGAFAPKWEDEIVRAALLMKEGEVLHGPTKALLG 373
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218  ||   234       244       254       264       274       284       294       304       314       324       334       344       354       364         
                                                                                                                                                                                                                                                        221|                                                                                                                                                 
                                                                                                                                                                                                                                                         228                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.............hhhhhhhhhhhh.eeeee...hhhhh.hhhhhhhhh.eeehhhhh.....eee.....hhhhhh......eeee..hhhhhhhhhhhhhhh..eeee.hhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eee..eee...eeeee..hhhhhhhhhhhhhh..eeeee..hhhhhhhhhhh..ee........hhhhhhhhhhhhhhhhhh..eeee.............hhhhhh......eeee.hhhhh..........eeee..eeee...hhhhhhhhhhhhhhhhhhhhhh...ee..ee.....hhhhhhheeee..ee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j1t B  -2 HHHMVTVAVPKERAPGERRVALVPEVVARLVKGGARVRVERGAGEGAYHPDEAYQEAGAEVVERGELLKGAHLLFTVQPPPEDLIQALEPGAIVVGFVQPHKNLELVRALQAKKATVIAMELIPRITRAQSMDALSSQATVAGYLAAIHAARLSPRFFPMLTTAAGTIRPAKVMVMGVGVAGLMAIATAKRLGAQVFAYDVRKAALEQALSLGAKPIELPISELTEEEKRIQHEALRDHVAGMDVLITTAQVPGRRAPILLTEDMVERLKPGTVVVDLAAESGGNCVLTKPGEVVEVRGVRVYGPLNLPSELSVHASEMYAKNLYNLSSLLIEKGAFAPKWEDEIVRAALLMKEGEVLHGPTKALLG 373
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217 ||    236       246       256       266       276       286       296       306       316       326       336       346       356       366       
                                                                                                                                                                                                                                                       219|                                                                                                                                                
                                                                                                                                                                                                                                                        229                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains d4j1tc_ C: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhh.hhh.eeehhhhhhhhhhh.eeeee..hhhhhhhhhh...........hhhhh..eeee............hhhhhh..eee...hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j1t C 274 KGSLKPIDVEDAAVMLAYAGKVVFVPGYGMALSQAQHKLKELADLLEARGVEVKFAIHPVAGRMPGHMNVLLAEAGVDYDKLKDLEEINPEFPTVDVAVVIGANDVVNPAARRPGSPLYGMPILDVDKAKNVIVIKRGQGKGFAGVENELFYAENTRMLYGDAQKVLTELIQALKRL 450
                                   283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       


Chain D from PDB  Type:PROTEIN  Length:372
                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee.............hhhhhhhhhhh..eeeee...hhhhh.hhhhhhhhh.eeehhhhh.....eee.....hhhhhhh.....eeee......hhhhhhhhhhh..eeee.hhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eee..eee...eeeee..hhhhhhhhhhhhhhh.eeeee..hhhhhhhhhh...ee.................hhhhhhhhhhhhhhhhhh..eeee.............hhhhhh......eeee.hhhhh..........eeee..eeee...hhhhhhhhhhhhhhhhhhhhhhh..ee..ee.....hhhhhhheeee..ee.hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4j1t D   1 MVTVAVPKERAPGERRVALVPEVVARLVKGGARVRVERGAGEGAYHPDEAYQEAGAEVVERGELLKGAHLLFTVQPPPEDLIQALEPGAIVVGFVQPHKNLELVRALQAKKATVIAMELIPRITRAQSMDALSSQATVAGYLAAIHAARLSPRFFPMLTTAAGTIRPAKVMVMGVGVAGLMAIATAKRLGAQVFAYDVRKAALEQALSLGAKPIELPISAEGEGGYARELTEEEKRIQHEALRDHVAGMDVLITTAQVPGRRAPILLTEDMVERLKPGTVVVDLAAESGGNCVLTKPGEVVEVRGVRVYGPLNLPSELSVHASEMYAKNLYNLSSLLIEKGAFAPKWEDEIVRAALLMKEGEVLHGPTKALL 372
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370  


Chain E from PDB  Type:PROTEIN  Length:373
                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.............hhhhhhhhhhhh.eeeee...hhhhh.hhhhhhhh..eeehhhhh.....eee.....hhhhhhh.....eeee......hhhhhhhhhhh..eeee.hhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh......eee..eee...eeeee..hhhhhhhhhhhhhh..eeeee..hhhhhhhhhhh..ee.................hhhhhhhhhhhhhhhhhh..eeee.............hhhhhh......eeee.hhhhh..........eeee..eeee...hhhhhhhhhhhhhhhhhhhhhhh..ee..ee.....hhhhhhheeee..ee.hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j1t E   1 MVTVAVPKERAPGERRVALVPEVVARLVKGGARVRVERGAGEGAYHPDEAYQEAGAEVVERGELLKGAHLLFTVQPPPEDLIQALEPGAIVVGFVQPHKNLELVRALQAKKATVIAMELIPRITRAQSMDALSSQATVAGYLAAIHAARLSPRFFPMLTTAAGTIRPAKVMVMGVGVAGLMAIATAKRLGAQVFAYDVRKAALEQALSLGAKPIELPISAEGEGGYARELTEEEKRIQHEALRDHVAGMDVLITTAQVPGRRAPILLTEDMVERLKPGTVVVDLAAESGGNCVLTKPGEVVEVRGVRVYGPLNLPSELSVHASEMYAKNLYNLSSLLIEKGAFAPKWEDEIVRAALLMKEGEVLHGPTKALLG 373
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370   


Chain F from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains d4j1tf_ F: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhhhhhhh..eeeee.........hhhhhhhhhhh.hhh.eehhhhhhhhhhhh.eeeee..hhhhhhhhhh...........hhhhh..eeeee...........hhhhhh..eeeee.hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j1t F 274 KGSLKPIDVEDAAVMLAYAGKVVFVPGYGMALSQAQHKLKELADLLEARGVEVKFAIHPVAGRMPGHMNVLLAEAGVDYDKLKDLEEINPEFPTVDVAVVIGANDVVNPAARRPGSPLYGMPILDVDKAKNVIVIKRGQGKGFAGVENELFYAENTRMLYGDAQKVLTELIQALKRL 450
                                   283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J1T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J1T)

(-) Gene Ontology  (8, 11)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Gly E:225 - Tyr E:226   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4j1t
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q72GR8_THET2 | Q72GR8
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
  Q72GS0_THET2 | Q72GS0
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  1.6.1.2
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q72GR8_THET2 | Q72GR8
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  Q72GS0_THET2 | Q72GS0
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q72GS0_THET2 | Q72GS0: 5uni
UniProtKB/TrEMBL
        Q72GR8_THET2 | Q72GR8: 4izh 4izi 4j16 4o9u
        Q72GS0_THET2 | Q72GS0: 4j16 4o93 4o9p 4o9t 4o9u

(-) Related Entries Specified in the PDB File

1xlt CRYSTAL STRUCTURE OF R. RUBRUM TRANSHYDROGENASE [(ALPHA1)2: DOMAIN III] HETEROTRIMER COMPLEX
4j16 CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS TRANSHYDROGENASE [(ALPHA1)2:DOMAIN III] HETEROTRIMER COMPLEX IN P212121