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(-) Description

Title :  STRUCTURE OF RRP9
 
Authors :  L. Zhang, J. Lin, K. Ye
Date :  31 Jan 13  (Deposition) - 05 Jun 13  (Release) - 05 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Beta-Propeller, Wd Domain, Rna Binding Protein, Preribosome (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Zhang, J. Lin, K. Ye
Structural And Functional Analysis Of The U3 Snorna Binding Protein Rrp9.
Rna V. 19 701 2013
PubMed-ID: 23509373  |  Reference-DOI: 10.1261/RNA.037580.112

(-) Compounds

Molecule 1 - RIBOSOMAL RNA-PROCESSING PROTEIN 9
    Chains: A, B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: WD DOMAIN, UNP RESIDUES 127-573
    Gene: RRP9, YPR137W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4J0X)

(-) Sites  (0, 0)

(no "Site" information available for 4J0X)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J0X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4J0X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J0X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J0X)

(-) Exons   (0, 0)

(no "Exon" information available for 4J0X)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:365
                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeee.....eeeeeee....eeeeee...eeeeee........eeeeeee.hhhhh..........eeeeee.....eeeeee...eeeeee....eeeeeee.......eeeeee.....eeeeee...eeeeee....eeeeeee.......eee.....eeeee.hhh.eeeeee....eeeeee...hhhhhhhhhh........eeeeeeee..eeeeee....eeeee.......eee...............eeee.....eeeee.....eeeeee......eeeeeee.....eeeeeeee...eeeeeeee.................eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j0x A 130 GRVFRYFGDKLLISEAKQSFTRVGENNLTCISCFQPRLFAYTVSKDLQLTKYDITDFSKRPKKLKYAKGGAKYIPNTTEGHYDEILTVAASPDGKYVVTGGRDRKLIVWSTESLSPVKVIPTKDRRGEVLSLAFRKNSDQLYASCADFKIRTYSINQFSQLEILYGHHDIVEDISALAMERCVTVGARDRTAMLWKIPDETRLTFRGGDEPQKLLRRWMKEFFCEGSIDVVSMVDDFHFITGSDNGNICLWSLAKKKPIFTERIAHGILLLQPFWITSLYAIPYSNVFISGSWSGSLKVWKISDNLRSFELLGELSGAKGVVTKIQVVESKFRILASIAKEHRLGRWIANVSGARNGIYSAVIDQ 570
                                   139       149       159     ||187       197       207       217    || 234       244       254       264       274       284       294       304       314       324       334       344       354       364       374||     404       414       424       434       469       479       489       499       509       519       529|      545       555       565     
                                                             165|                                   222|                                                                                                                                              375|                                            443|                                                         529|                                  
                                                              184                                    230                                                                                                                                               396                                             469                                                          536                                  


Chain B from PDB  Type:PROTEIN  Length:366
                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeeeeeeeeee.....eeeeeee....eeeeee...eeeeee........eeeeeee.hhhhh..........eeeeee.....eeeeee...eeeeee....eeeeeee.......eeeeee.....eeeeee...eeeeee....eeeeeee.......eeee....eeeee.hhh.eeeeee....eeeeee...hhhhhhhhhh........eeeeeeee..eeeeee....eeeee.......eee...............eeee.....eeeee.....eeeeee......eeeeeee.....eeeeeeee...eeeeeeee.................eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4j0x B 129 QGRVFRYFGDKLLISEAKQSFTRVGENNLTCISCFQPRLFAYTVSKDLQLTKYDITDFSKRPKKLKYAKGGAKYIPNTTEGHYDEILTVAASPDGKYVVTGGRDRKLIVWSTESLSPVKVIPTKDRRGEVLSLAFRKNSDQLYASCADFKIRTYSINQFSQLEILYGHHDIVEDISALAMERCVTVGARDRTAMLWKIPDETRLTFRGGDEPQKLLRRWMKEFFCEGSIDVVSMVDDFHFITGSDNGNICLWSLAKKKPIFTERIAHGILLLQPFWITSLYAIPYSNVFISGSWSGSLKVWKISDNLRSFELLGELSGAKGVVTKIQVVESKFRILASIAKEHRLGRWIANVSGARNGIYSAVIDQ 570
                                   138       148       158      |186       196       206       216     ||233       243       253       263       273       283       293       303       313       323       333       343       353       363       373 ||    403       413       423       433       443|      478       488       498       508       518       528||     544       554       564      
                                                              165|                                   222|                                                                                                                                              375|                                            443|                                                         529|                                  
                                                               184                                    230                                                                                                                                               396                                             469                                                          536
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J0X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J0X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J0X)

(-) Gene Ontology  (11, 11)

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  RRP9_YEAST | Q06506
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 Related Entries

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        RRP9_YEAST | Q06506: 5jpq 5tzs 5wyj 5wyk

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