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(-) Description

Title :  CRYSTAL STRUCTURE OF LPXA BOUND TO RJPXD33
 
Authors :  R. J. Jenkins, J. L. Meagher, J. A. Stuckey, G. D. Dotson
Date :  30 Jan 13  (Deposition) - 23 Apr 14  (Release) - 18 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Acyltransferase, Left-Handed Beta Helix, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. J. Jenkins, K. A. Heslip, J. L. Meagher, J. A. Stuckey, G. D. Dotson
Structural Basis For The Recognition Of Peptide Rjpxd33 By Acyltransferases In Lipid A Biosynthesis.
J. Biol. Chem. V. 289 15527 2014
PubMed-ID: 24742680  |  Reference-DOI: 10.1074/JBC.M114.564278

(-) Compounds

Molecule 1 - ACYL-[ACYL-CARRIER-PROTEIN]--UDP-N-ACETYLGLUCOSAMINE O- ACYLTRANSFERASE
    Chains: A
    EC Number: 2.3.1.129
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24A
    Expression System Strain: BL21(AI)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: B0181, JW0176, LPXA
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K-12
    Synonym: UDP-N-ACETYLGLUCOSAMINE ACYLTRANSFERASE
 
Molecule 2 - PUTATIVE METABOLITE TRANSPORT PROTEIN YJHB
    Chains: B
    Engineered: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Other Details: PEPTIDE SYNTHESIS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1DMS1Ligand/IonDIMETHYL SULFOXIDE
2EDO2Ligand/Ion1,2-ETHANEDIOL
3PO43Ligand/IonPHOSPHATE ION
Biological Unit 1 (3, 18)
No.NameCountTypeFull Name
1DMS3Ligand/IonDIMETHYL SULFOXIDE
2EDO6Ligand/Ion1,2-ETHANEDIOL
3PO49Ligand/IonPHOSPHATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:35 , HIS A:53 , ARG A:216 , ARG A:224 , PO4 A:303 , EDO A:305 , EDO A:306 , HOH A:524BINDING SITE FOR RESIDUE PO4 A 301
2AC2SOFTWAREGLY A:41 , VAL A:43 , ASP A:59 , ASN A:60 , GLU A:61 , THR A:213 , TYR A:243 , HOH A:507 , HOH A:549 , HOH A:593BINDING SITE FOR RESIDUE PO4 A 302
3AC3SOFTWAREARG A:100 , ARG A:216 , LYS A:220 , PO4 A:301 , EDO A:306 , HOH A:524 , HOH A:542 , HOH A:583BINDING SITE FOR RESIDUE PO4 A 303
4AC4SOFTWAREASP A:114 , ARG A:132 , ILE A:134BINDING SITE FOR RESIDUE DMS A 304
5AC5SOFTWAREGLY A:196 , VAL A:197 , ARG A:216 , TYR A:219 , PO4 A:301 , HOH A:487BINDING SITE FOR RESIDUE EDO A 305
6AC6SOFTWAREHIS A:35 , ASN A:51 , GLY A:52 , PO4 A:301 , PO4 A:303 , HOH A:523 , HOH A:596BINDING SITE FOR RESIDUE EDO A 306

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J09)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asn A:190 -His A:191

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J09)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J09)

(-) Exons   (0, 0)

(no "Exon" information available for 4J09)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee....ee....ee....ee....ee...eee....ee....ee..eeee....ee....eeee............eeee....ee....eee........eeee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee.......eeee....eeeeehhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j09 A   1 MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNAYKLIYRSGKTLDEVKPEIAELAETYPEVKAFTDFFARSTRGLIR 262
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260  


Chain B from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 4j09 B   1 TNLYML   6
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J09)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J09)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J09)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)

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    Asn A:190 - His A:191   [ RasMol ]  
 
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  YJHB_ECOLI | P39352
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LPXA_ECOLI | P0A722: 1lxa 2aq9 2jf2 2jf3 2qia 2qiv

(-) Related Entries Specified in the PDB File

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