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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE ACYLHYDROLASE (BACUNI_03406) FROM BACTEROIDES UNIFORMIS ATCC 8492 AT 1.37 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  28 Jan 13  (Deposition) - 06 Mar 13  (Release) - 06 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.37
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Pf13472 Family, Gdsl-Like Lipase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Acylhydrolase (Bacuni_03406 From Bacteroides Uniformis Atcc 8492 At 1. 37 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GDSL-LIKE PROTEIN
    Atcc: 8492
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDE5T
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 18-228
    Organism Scientific: BACTEROIDES UNIFORMIS
    Organism Taxid: 411479

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 15)

Asymmetric/Biological Unit (4, 15)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3MSE10Mod. Amino AcidSELENOMETHIONINE
4UNL2Ligand/IonUNKNOWN LIGAND

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:134 , VAL A:140 , HOH A:714BINDING SITE FOR RESIDUE CL A 302
2AC2SOFTWARESER A:199 , THR A:202 , ARG A:203 , HOH A:458 , HOH A:514 , GLY B:152 , TRP B:153 , ASP B:204 , VAL B:206BINDING SITE FOR RESIDUE GOL A 303
3AC3SOFTWAREARG B:134 , VAL B:140BINDING SITE FOR RESIDUE CL B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IYJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IYJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IYJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IYJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4IYJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains d4iyja_ A: automated matches                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhhhheeeee....hhhhhhhhhhhhhhhhh..eeee..hhhhhh......hhhhhhhhhhhhhhhhhhh..eeeee...............hhhhhhhhhhhhhhhhhhhh...eehhhhhhee....ee.hhhh......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iyj A  18 SDAQKQDWGNLKRYAEANKELVRKGKQKDRVVFmGNSITEGWVANDAAFFEDNGYVGRGIGGQTSSHFLLRFREDVIKLAPALVVINAGTNDIAENAGAYNEEYTFGNIVSmVELARANKIKVILTSVLPAAAFGWNPSVKDAPQKImQLNARIRKYAQENKIPYVDYYSEmVEGDNKALNSSYTRDGVHPTLEGYKVmEALIKKAIDKVL 228
                                    27        37        47   |    57        67        77        87        97       107       117       127 |     137       147       157       167       177       187 |     197       207       217       227 
                                                            51-MSE                                                                       129-MSE                             165-MSE                 189-MSE                    216-MSE        


Chain B from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains d4iyjb_ B: automated matches                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhheeeee....hhhhhhhhhhhhhhhhh..eeee..hhhhhh......hhhhhhhhhhhhhhhhhhh..eeeee...............hhhhhhhhhhhhhhhhhhhh...eehhhhhhee....ee...........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iyj B  21 QKQDWGNLKRYAEANKELVRKGKQKDRVVFmGNSITEGWVANDAAFFEDNGYVGRGIGGQTSSHFLLRFREDVIKLAPALVVINAGTNDIAENAGAYNEEYTFGNIVSmVELARANKIKVILTSVLPAAAFGWNPSVKDAPQKImQLNARIRKYAQENKIPYVDYYSEmVEGDNKALNSSYTRDGVHPTLEGYKVmEALIKKAIDKVL 228
                                    30        40        50|       60        70        80        90       100       110       120       130       140       150       160    |  170       180       190       200       210     | 220        
                                                         51-MSE                                                                       129-MSE                             165-MSE                 189-MSE                    216-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IYJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IYJ)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4IYJ)

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