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(-) Description

Title :  CRYSTAL STRUCTURE OF THE INSV-BEN DOMAIN COMPLEXED TO ITS DNA TARGET SITE
 
Authors :  A. Ren, A. Serganov, D. J. Patel
Date :  24 Jan 13  (Deposition) - 20 Mar 13  (Release) - 03 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.58
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Ben Domain, Transcriptional Repressor, Dna Binding Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Dai, A. Ren, J. O. Westholm, A. A. Serganov, D. J. Patel, E. C. Lai
The Ben Domain Is A Novel Sequence-Specific Dna-Binding Domain Conserved In Neural Transcriptional Repressors.
Genes Dev. V. 27 602 2013
PubMed-ID: 23468431  |  Reference-DOI: 10.1101/GAD.213314.113

(-) Compounds

Molecule 1 - 5'-D(*GP*TP*TP*CP*CP*AP*AP*TP*TP*GP*GP*AP*A)-3'
    Chains: C, D
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - RE55538P
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: INSV-BEN DOMAIN (UNP RESIDUES 251-365)
    Gene: CG3227, INSENSITIVE, INSV
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric/Biological Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4IX7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IX7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IX7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IX7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IX7)

(-) Exons   (0, 0)

(no "Exon" information available for 4IX7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee......eeehhhhh.....hhhhhhhhhhhhhhhhhhhhhee.....hhhhh.......ee.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 4ix7 A 251 DNVmVSIGPNNTCVPASVFENINWSVCSLATRKLLVTIFDRETLATHSVTGKPSPAFKDQDKPLKRmLDPGKIQDIIFAVTHKCNASEKEVRNAITTKCADENKmmKIQNVKRR 364
                               |   260       270       280       290       300       310      |320       330       340       350    || 360    
                               |                                                            317-MSE                               355-MSE     
                             254-MSE                                                                                               356-MSE    


Chain B from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee......eeehhhhhhh...hhhhhhhhhhhhhhhhhhhhhee.....hhhhh.......ee.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 4ix7 B 251 DNVmVSIGPNNTCVPASVFENINWSVCSLATRKLLVTIFDRETLATHSVTGKPSPAFKDQDKPLKRmLDPGKIQDIIFAVTHKCNASEKEVRNAITTKCADENKmmKIQNVKRR 364
                               |   260       270       280       290       300       310      |320       330       340       350    || 360    
                             254-MSE                                                        317-MSE                               355-MSE     
                                                                                                                                   356-MSE    


Chain C from PDB  Type:DNA  Length:13
                                             
                 4ix7 C   1 GTTCCAATTGGAA  13
                                    10   


Chain D from PDB  Type:DNA  Length:13
                                             
                 4ix7 D   1 GTTCCAATTGGAA  13
                                    10
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IX7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IX7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IX7)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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