4IVN - JenaLib

Title :   THE VIBRIO VULNIFICUS NANR PROTEIN COMPLEXED WITH MANNAC-6P

Authors :   J. Hwang, M. H. Kim

Date :   23 Jan 13 (Deposition) - 17 Jul 13 (Release) - 20 Nov 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym./Biol. Unit : A,B

Keywords :   Isomerase Fold, Nan Operon Regulator For Sialic Acid Catabolism, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Hwang, B. S. Kim, S. Y. Jang, J. G. Lim, D. J. You, H. S. Jung, T. K. Oh, J. O. Lee, S. H. Choi, M. H. Kim
Structural Insights Into The Regulation Of Sialic Acid Catabolism By The Vibrio Vulnificus Transcriptional Repressor Nanr
Proc. Natl. Acad. Sci. Usa V. 110 E2829 2013
PubMed-ID: 23832782 | Reference-DOI: 10.1073/PNAS.1302859110

Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	VIBRIO VULNIFICUS
	Organism Taxid	:	196600
	Strain	:	YJ016
	Synonym	:	NANR

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL A:135 , ALA A:137 , SER A:138 , HIS A:163 , MET A:167 , SER A:182 , SER A:183 , SER A:184 , THR A:187 , GLY A:230 , HOH A:1102 , HOH A:1103 , HOH A:1105 , HOH A:1108 , HOH A:1109 , TYR B:147 , ARG B:151 , VAL B:272 , MET B:276	BINDING SITE FOR RESIDUE BMX A 1000
2	AC2	SOFTWARE	TYR A:147 , ARG A:151 , VAL A:272 , VAL B:135 , ALA B:137 , SER B:138 , HIS B:163 , MET B:167 , SER B:182 , SER B:183 , SER B:184 , THR B:187 , GLY B:230 , GLY B:234 , HOH B:1102 , HOH B:1104 , HOH B:1113 , HOH B:1116 , HOH B:1119	BINDING SITE FOR RESIDUE BMX B 1000

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:264
                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhhhh...eeee.hhhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhh...eeeee......hhhhh.eeee...........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ivn A   6 NLLVRLRSNMEPFSKKLRVVADYILENAHDVQFQTITDLARNTQTSEATVVRLCRDMGYKGYSDFRMALAVDLSQTGDICDVSAQSAVDSLQDTAKLIDRKSLARIVERVHQAEFIGCIGVGASSIVGRYLAYRLIRIGKKAIMFEDTHLAAMSASRSSQGDLWFAVSSSGSTKEVIHAAGLAYKRDIPVVSLTNINHSPLSSLSTEMLVAARPEGPLTGGAFASKVGALLLVDVLVNSLLESYPEYKDSVQETAEVVIPLMAN 278
                                    15        25        35        45        55        65        75     || 94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274    
                                                                                                      81|                                                                                                                                                                                           
                                                                                                       91

Chain B from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhh...eeeee....hhhhhhh.eeee...........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ivn B   6 NLLVRLRSNMEPFSKKLRVVADYILENAHDVQFQTITDLARNTQTSEATVVRLCRDMGYKGYSDFRMALAVDLSQDICDVSAQSAVDSLQDTAKLIDRKSLARIVERVHQAEFIGCIGVGASSIVGRYLAYRLIRIGKKAIMFEDTHLAAMSASRSSQGDLWFAVSSSGSTKEVIHAAGLAYKRDIPVVSLTNINHSPLSSLSTEMLVAARPEGPLTGGAFASKVGALLLVDVLVNSLLESYPEYKDSVQETAEVVIPLMA 277
                                    15        25        35        45        55        65        75    ||  96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276 
                                                                                                     80|                                                                                                                                                                                         
                                                                                                      92

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

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Description