Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF A PUTATIVE ASPARTATE CARBAMOYLTRANSFERASE FROM TRYPANOSOMA CRUZI
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  22 Jan 13  (Deposition) - 10 Apr 13  (Release) - 10 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,F  (1x)
Biol. Unit 2:  C,D,E  (1x)
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Aspartate Carbamoyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. W. Fairman, J. A. Abendroth, T. E. Edwards, D. Lorimer
X-Ray Crystal Structure Of A Putative Aspartate Carbamoyltransferase From Trypanosoma Cruzi
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ASPARTATE CARBAMOYLTRANSFERASE, PUTATIVE
    Chains: A, B, C, D, E, F
    EC Number: 2.1.3.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TC00.1047053508375.30, TC00.1047053511923.110
    Organism Scientific: TRYPANOSOMA CRUZI
    Organism Taxid: 353153
    Strain: CL BRENER

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB   F
Biological Unit 2 (1x):   CDE 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 18)

Asymmetric Unit (3, 18)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2PO46Ligand/IonPHOSPHATE ION
3UNX11Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1EDO-1Ligand/Ion1,2-ETHANEDIOL
2PO43Ligand/IonPHOSPHATE ION
3UNX5Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 2 (3, 10)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2PO43Ligand/IonPHOSPHATE ION
3UNX6Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:62 , SER A:63 , ARG A:64 , THR A:65 , ARG A:113 , LEU A:289 , HOH A:523 , SER B:89 , LYS B:92BINDING SITE FOR RESIDUE PO4 A 401
2AC2SOFTWARESER B:62 , ARG B:64 , THR B:65 , ARG B:113 , HIS B:141 , LEU B:289 , HOH B:587BINDING SITE FOR RESIDUE PO4 B 401
3AC3SOFTWARESER C:62 , SER C:63 , ARG C:64 , THR C:65 , ARG C:113 , LEU C:289 , PRO C:290 , HOH C:658 , SER D:89BINDING SITE FOR RESIDUE PO4 C 401
4AC4SOFTWARESER D:62 , SER D:63 , ARG D:64 , THR D:65 , ARG D:113 , LEU D:289BINDING SITE FOR RESIDUE PO4 D 500
5AC5SOFTWARESER C:89 , SER E:62 , SER E:63 , ARG E:64 , THR E:65 , ARG E:113 , LEU E:289 , PRO E:290 , HOH E:632BINDING SITE FOR RESIDUE PO4 E 401
6AC6SOFTWAREGLY B:218 , SER E:9 , LYS E:13 , GLN E:20 , ASP E:25 , HOH E:569BINDING SITE FOR RESIDUE EDO E 402
7AC7SOFTWARESER A:89 , SER F:62 , SER F:63 , ARG F:64 , THR F:65 , ARG F:113 , LEU F:289BINDING SITE FOR RESIDUE PO4 F 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IV5)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Leu A:289 -Pro A:290
2Leu B:289 -Pro B:290
3Leu C:289 -Pro C:290
4Leu D:289 -Pro D:290
5Leu E:289 -Pro E:290
6Leu F:289 -Pro F:290

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IV5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IV5)

(-) Exons   (0, 0)

(no "Exon" information available for 4IV5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:303
                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4iv5a1 A:3-157 automated matches                                                                                                                          d4iv5a2 A:158-327 automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) ....hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.----------hhhhhhhhhhhhhh..ee.......hhhhhh.hhhhhhhhhhh...eeeeee...hhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhh...eeeee.hhhhh.hhhhhh.hhhhhhhhh.eeeee...hhhhhhhh.eeee...........hhhhhh....eee.........hhhhh.......hhhhhhhhhhhhhhhhhhhh Sec.struct. author (1)
     Sec.struct. author (2) --------------------------------------------------eeeeeeeeeeeeee----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iv5 A   3 ELPPVASLKGKSITSAEQFSRADIYALIHLASAMQRKIDAGEVLNLLQGRIMTPLFFEDSSRTFSSFCAAMIRLGGSVVNFKVEASSINKGETLADTIRTLDSYSDVLVMRHPRQDAIEEALSVAQHPILNAGNGAGEHPTQALLDTLTIHSELGSVDGITIALIGDLKMGRTVHSLLKLLVRNFSIKCVFLVAPDALQMPQDVLEPLQHEIATKGVIIHRTHALTDEVMQKSDVLYTTRLQADITIDAARMRLAKEKMIVMHPLPRNDELSTTVDADPRAAYFRQMRYGMFMRMAILWSVLA 327
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242 ||    274       284       294       304       314       324   
                                                                                                                                                                                                                                                                           244|                                                            
                                                                                                                                                                                                                                                                            267                                                            


Chain B from PDB  Type:PROTEIN  Length:287
                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4iv5b1 B:3-157 automated matches                                                                                                                          d4iv5b2 B:158-327 automated matches                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) ....hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh..........----------hhhhhhhhhhhhhh..ee...........hh.hhhhhhhhhhh...eeeee..hhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhh..eeee..hhhhh.eeee.....hhhhhh......eee.........hhhhh.......hhhhhhhhhhhhhhhhhhhh Sec.struct. author (1)
     Sec.struct. author (2) --------------------------------------------------eeeeeeeeeeeeee------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iv5 B   3 ELPPVASLKGKSITSAEQFSRADIYALIHLASAMQRKIDAGEVLNLLQGRIMTPLFFEDSSRTFSSFCAAMIRLGGSVVNFKVEASSINKGETLADTIRTLDSYSDVLVMRHPRQDAIEEALSVAQHPILNAGNGAGEHPTQALLDTLTIHSELGSVDGITIALIGDLKMGRTVHSLLKLLVRNFSIKCVFLVAQDVLEPLQHEIATKGVIIHRTEVMQKSDVLYTTRITIDAARMRLAKEKMIVMHPLPRNDELSTTVDADPRAAYFRQMRYGMFMRMAILWSVLA 327
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192   ||  209       219    || 234       270       280       290       300       310       320       
                                                                                                                                                                                                                           196|                 224|         242|                                                          
                                                                                                                                                                                                                            204                  230          269                                                          


Chain C from PDB  Type:PROTEIN  Length:302
                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4iv5c1 C:3-157 automated matches                                                                                                                          d4iv5c2 C:158-327 automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) ....hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh..........----------hhhhhhhhhhhhhh..ee...........hh.hhhhhhhhhhh...eeeeee...hhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhh...eeeee.hhhhh.hhhhhh.hhhhhhhhh.eeeee...hhhhhhhh.eee.........hhhhhh......eee.........hhhhh.......hhhhhhhhhhhhhhhhhhhh Sec.struct. author (1)
     Sec.struct. author (2) --------------------------------------------------eeeeeeeeeeeeee---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iv5 C   3 ELPPVASLKGKSITSAEQFSRADIYALIHLASAMQRKIDAGEVLNLLQGRIMTPLFFEDSSRTFSSFCAAMIRLGGSVVNFKVEASSINKGETLADTIRTLDSYSDVLVMRHPRQDAIEEALSVAQHPILNAGNGAGEHPTQALLDTLTIHSELGSVDGITIALIGDLKMGRTVHSLLKLLVRNFSIKCVFLVAPDALQMPQDVLEPLQHEIATKGVIIHRTHALTDEVMQKSDVLYTTRLQDITIDAARMRLAKEKMIVMHPLPRNDELSTTVDADPRAAYFRQMRYGMFMRMAILWSVLA 327
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242 ||    275       285       295       305       315       325  
                                                                                                                                                                                                                                                                           244|                                                           
                                                                                                                                                                                                                                                                            268                                                           


Chain D from PDB  Type:PROTEIN  Length:303
                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4iv5d1 D:4-157 automated matches                                                                                                                         d4iv5d2 D:158-327 automated matches                                                                                                                   SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) ...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh..........----------hhhhhhhhhhhhhh..ee...........hh.hhhhhhhhhhh...eeeeee...hhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhh...eeeee.hhhhh.hhhhhh.hhhhhhhhh.eeeee...hhhhhhhh.eeee..........hhhhhh......eee.........hhhhh.......hhhhhhhhhhhhhhhhhhhh Sec.struct. author (1)
     Sec.struct. author (2) -------------------------------------------------eeeeeeeeeeeeee------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Sec.struct. author (2)
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iv5 D   4 LPPVASLKGKSITSAEQFSRADIYALIHLASAMQRKIDAGEVLNLLQGRIMTPLFFEDSSRTFSSFCAAMIRLGGSVVNFKVEASSINKGETLADTIRTLDSYSDVLVMRHPRQDAIEEALSVAQHPILNAGNGAGEHPTQALLDTLTIHSELGSVDGITIALIGDLKMGRTVHSLLKLLVRNFSIKCVFLVAPDALQMPQDVLEPLQHEIATKGVIIHRTHALTDEVMQKSDVLYTTRLQKADITIDAARMRLAKEKMIVMHPLPRNDELSTTVDADPRAAYFRQMRYGMFMRMAILWSVLA 327
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243||     274       284       294       304       314       324   
                                                                                                                                                                                                                                                                          244|                                                             
                                                                                                                                                                                                                                                                           266                                                             


Chain E from PDB  Type:PROTEIN  Length:294
                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4iv5e1 E:3-157 automated matches                                                                                                                  d4iv5e2 E:158-327 automated matches                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
     Sec.struct. author (1) ....hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh..........----------hhhhhhhhhhhhhh..ee......hhhhhhhhhhh...eeeeee...hhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhh...eeeee.hhhhh.hhhhhhhhhhhhhhhh.eeeee...hhhhhhhh.eeee........hhhhhh......eee.........hhhhh.......hhhhhhhhhhhhhhhhhhhh Sec.struct. author (1)
     Sec.struct. author (2) --------------------------------------------------eeeeeeeeeeeeee-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4iv5 E   3 ELPPVASLKGKSITSAEQFSRADIYALIHLASAMQRKIDAGEVLNLLQGRIMTPLFFEDSSRTFSSFCAAMIRLGGSVVNFKVETLADTIRTLDSYSDVLVMRHPRQDAIEEALSVAQHPILNAGNGAGEHPTQALLDTLTIHSELGSVDGITIALIGDLKMGRTVHSLLKLLVRNFSIKCVFLVAPDALQMPQDVLEPLQHEIATKGVIIHRTHALTDEVMQKSDVLYTTRLQDITIDAARMRLAKEKMIVMHPLPRNDELSTTVDADPRAAYFRQMRYGMFMRMAILWSVLA 327
                                    12        22        32        42        52        62        72        82  ||   100       110       120       130       140       150       160       170       180       190       200       210       220       230       240   ||  273       283       293       303       313       323    
                                                                                                             85|                                                                                                                                                   244|                                                           
                                                                                                              94                                                                                                                                                    268                                                           


Chain F from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4iv5f1 F:5-157 automated matches                                                                                                                 d4iv5f2 F:158-327 automated matches                                                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) ..hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh..........----------hhhhhhhhhhhhhh..ee.......hhhhhhhhhhh...eeeeee...hhhhhhhh.....eeeeee....hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhh...eeeee.hhhhh.hhhhhhhhhhhhhhh..eeeee...hhhhhhhh.eeee.....hhhhhh......eee.........hhhhh.......hhhhhhhhhhhhhhhhhhhh Sec.struct. author (1)
     Sec.struct. author (2) ------------------------------------------------eeeeeeeeeeeeee------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Sec.struct. author (2)
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iv5 F   5 PPVASLKGKSITSAEQFSRADIYALIHLASAMQRKIDAGEVLNLLQGRIMTPLFFEDSSRTFSSFCAAMIRLGGSVVNFKVGETLADTIRTLDSYSDVLVMRHPRQDAIEEALSVAQHPILNAGNGAGEHPTQALLDTLTIHSELGSVDGITIALIGDLKMGRTVHSLLKLLVRNFSIKCVFLVAPDALQMPQDVLEPLQHEIATKGVIIHRTHALTDEVMQKSDVLYTTRLTIDAARMRLAKEKMIVMHPLPRNDELSTTVDADPRAAYFRQMRYGMFMRMAILWSVLA 327
                                    14        24        34        44        54        64        74        84||     101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 ||    277       287       297       307       317       327
                                                                                                           85|                                                                                                                                                   243|                                                         
                                                                                                            93                                                                                                                                                    270
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)
(-)
Fold: ATC-like (129)
(-)
Superfamily: Aspartate/ornithine carbamoyltransferase (122)
(-)
Family: automated matches (35)
(-)
Protein domain: automated matches (35)
(-)
Trypanosoma cruzi [TaxId: 353153] (1)
1ad4iv5a1A:3-157
1bd4iv5a2A:158-327
1cd4iv5f1F:5-157
1dd4iv5f2F:158-327
1ed4iv5b1B:3-157
1fd4iv5b2B:158-327
1gd4iv5c1C:3-157
1hd4iv5c2C:158-327
1id4iv5d1D:4-157
1jd4iv5d2D:158-327
1kd4iv5e1E:3-157
1ld4iv5e2E:158-327

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IV5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IV5)

(-) Gene Ontology  (6, 12)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    EDO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    UNX  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Leu A:289 - Pro A:290   [ RasMol ]  
    Leu B:289 - Pro B:290   [ RasMol ]  
    Leu C:289 - Pro C:290   [ RasMol ]  
    Leu D:289 - Pro D:290   [ RasMol ]  
    Leu E:289 - Pro E:290   [ RasMol ]  
    Leu F:289 - Pro F:290   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4iv5
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  O15636_TRYCR | O15636
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  Q4D3W3_TRYCC | Q4D3W3
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  2.1.3.2
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  O15636_TRYCR | O15636
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  Q4D3W3_TRYCC | Q4D3W3
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 4IV5)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4IV5)