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(-) Description

Title :  CRYSTAL STRUCTURE OF MTB FADD10 IN COMPLEX WITH DODECANOYL-AMP
 
Authors :  Z. Liu, F. Wang, J. C. Sacchettini, Tb Structural Genomics Consorti (Tbsgc)
Date :  14 Jan 13  (Deposition) - 08 May 13  (Release) - 20 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Open Conformation, Structural Genomics, Tb Structural Genomics Consortium, Tbsgc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Liu, T. R. Ioerger, F. Wang, J. C. Sacchettini
Structures Of Mycobacterium Tuberculosis Fadd10 Protein Reveal A New Type Of Adenylate-Forming Enzyme.
J. Biol. Chem. V. 288 18473 2013
PubMed-ID: 23625916  |  Reference-DOI: 10.1074/JBC.M113.466912

(-) Compounds

Molecule 1 - LONG CHAIN FATTY ACID COA LIGASE FADD10
    Chains: A
    EC Number: 2.3.1.86
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST17
    Expression System Strain: BL21 (DE3) PLYS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RV0099
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: H37RV

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
11ZZ1Ligand/Ion5'-O-[(S)-(DODECANOYLOXY)(HYDROXY)PHOSPHORYL]ADENOSINE
2MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
11ZZ2Ligand/Ion5'-O-[(S)-(DODECANOYLOXY)(HYDROXY)PHOSPHORYL]ADENOSINE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:221 , HIS A:225 , ILE A:226 , TRP A:231 , CYS A:265 , LEU A:266 , GLY A:292 , GLY A:294 , GLY A:295 , SER A:296 , GLN A:315 , VAL A:316 , TYR A:317 , GLY A:318 , LEU A:319 , SER A:320 , ASP A:408 , MG A:602 , HOH A:719BINDING SITE FOR RESIDUE 1ZZ A 601
2AC2SOFTWAREGLY A:295 , 1ZZ A:601BINDING SITE FOR RESIDUE MG A 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IR7)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Pro A:121 -Gly A:122
2Ala A:368 -Gly A:369
3Arg A:423 -Ser A:424
4Pro A:499 -Met A:500

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IR7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IR7)

(-) Exons   (0, 0)

(no "Exon" information available for 4IR7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:508
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh...eeee.......eehhhhhhhhhhhhhhhhh.......eeeeee..hhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhhhh..eeee......hhhhhh..eee........hhhhhh.........eeeeeee.....eeeeee.hhhhhhhhhhhhh...........eee......hhhhhhhhhhhhh...eee.......hhhhhhhhh...eeeehhhhhhhhhhhhhhh........eeee.....hhhhhhhhhhh..eeeeeeee....eeeeeee...hhhhhhhh.eeeee....eeeee.................eeeeeee......ee..hhhhhhhhee..eeeeeeeeee.....ee........eee..eeehhhhhhhhhhh...eeeeeeeeeee...eeeeeeeeee....hhhhhhhhhhhhhhhhhhhh.......eeee............hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ir7 A  11 QLPSTVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSAVPEALHSIPVIAVDIAAHSLDAASLAGNADQGSEDPLAMIFTSTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVRFIEATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATA 531
                                    20        30        40        50        60        70        80        90       100       110       120  ||   135       145||     161       171      |183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523        
                                                                                                                                          123|              146|                      178|                                                                                                                                                                                                                                                                                                                                                              
                                                                                                                                           129               153                       181
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IR7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IR7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IR7)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4IR7)

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