Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF METALLOTHIOL TRANSFERASE FOSB 2 FROM BACILLUS ANTHRACIS STR. AMES
 
Authors :  N. Maltseva, Y. Kim, R. Jedrzejczak, R. Zhang, W. F. Anderson, A. Joachi Center For Structural Genomics Of Infectious Diseases (Csgi
Date :  14 Jan 13  (Deposition) - 23 Jan 13  (Release) - 23 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Alpha-Beta Fold, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  N. Maltseva, Y. Kim, R. Jedrzejczak, R. Zhang, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of Metallothiol Transferase Fosb 2 From Bacillus Anthracis Str. Ames
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - METALLOTHIOL TRANSFERASE FOSB 2
    ChainsA, B
    EC Number2.5.1.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPMCSG28
    Expression System StrainBL21 MAGIC
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    GeneBAS3818, BA_4109, FOSB-2, FOSB2, GBAA_4109
    Organism CommonANTHRAX,ANTHRAX BACTERIUM
    Organism ScientificBACILLUS ANTHRACIS
    Organism Taxid198094
    StrainAMES
    SynonymFOSFOMYCIN RESISTANCE PROTEIN 2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 14)

Asymmetric/Biological Unit (4, 14)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2FCN2Ligand/IonFOSFOMYCIN
3MSE6Mod. Amino AcidSELENOMETHIONINE
4ZN2Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:66 , GLU A:115 , FCN A:202 , HIS B:7BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWARETYR A:64 , HIS A:66 , ARG A:94 , TYR A:105 , GLU A:115 , ARG A:124 , ZN A:201 , HOH A:302 , HIS B:7 , CYS B:9 , TRP B:46 , ALA B:48 , ASN B:50 , HOH B:309BINDING SITE FOR RESIDUE FCN A 202
3AC3SOFTWAREGLU A:20 , PHE A:21 , ASN A:86 , ASP A:87 , EDO A:204 , HOH A:317 , HOH A:337BINDING SITE FOR RESIDUE EDO A 203
4AC4SOFTWARELYS A:17 , GLU A:20 , PRO A:109 , EDO A:203BINDING SITE FOR RESIDUE EDO A 204
5AC5SOFTWAREHIS A:7 , HIS B:66 , GLU B:115 , FCN B:202BINDING SITE FOR RESIDUE ZN B 201
6AC6SOFTWAREHIS A:7 , CYS A:9 , TRP A:46 , ALA A:48 , ASN A:50 , TYR B:64 , HIS B:66 , ARG B:94 , TYR B:105 , GLU B:115 , ARG B:124 , ZN B:201 , HOH B:305BINDING SITE FOR RESIDUE FCN B 202
7AC7SOFTWARETYR A:64 , ARG A:94 , GLU B:52 , HIS B:134 , MSE B:135BINDING SITE FOR RESIDUE EDO B 203
8AC8SOFTWAREHOH B:329BINDING SITE FOR RESIDUE EDO B 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IR0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IR0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IR0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IR0)

(-) Exons   (0, 0)

(no "Exon" information available for 4IR0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                   
               SCOP domains d4ir0a_ A: automated matches                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee.hhhhhhhhhhhh...eeeee...eeeeee..eeeeeee......hhhhhh..eeeee.hhhhhhhhhhhhhhh...ee.....hhhhh.eeeee.....eeeee..hhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ir0 A   0 mmLQGINHICFSVSNLEKSIEFYQKILQAKLLVKGRKLAYFDLNGLWIALNVEEDIPRNEIKQSYTHmAFTVTNEALDHLKEVLIQNDVNILPGRERDERDQRSLYFTDPDGHKFEFHTGTLQNRLEYYKEDKKHmTFYIAGENLYF 146
                            ||       9        19        29        39        49        59       |69        79        89        99       109       119       129     | 139       
                            ||                                                                67-MSE                                                             135-MSE       
                            0-MSE                                                                                                                                              
                             1-MSE                                                                                                                                             

Chain B from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains d4ir0b_ B: automated matches                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.hhhhhhhhhhhh...eeeee...eeeeee..eeeeeee......hhhhhh..eeeee.hhhhhhhhhhhhhhh..eee.....hhhhh.eeeee.....eeeee..hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ir0 B   2 LQGINHICFSVSNLEKSIEFYQKILQAKLLVKGRKLAYFDLNGLWIALNVEEDIPRNEIKQSYTHmAFTVTNEALDHLKEVLIQNDVNILPGRERDERDQRSLYFTDPDGHKFEFHTGTLQNRLEYYKEDKKHm 135
                                    11        21        31        41        51        61     |  71        81        91       101       111       121       131   |
                                                                                            67-MSE                                                             135-MSE

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IR0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IR0)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    EDO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FCN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ZN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4ir0)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4ir0
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  FOSB2_BACAN | Q81W73
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  2.5.1.-
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  FOSB2_BACAN | Q81W73
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FOSB2_BACAN | Q81W734jd1 5f6q

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4IR0)