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(-) Description

Title :  MUTANT P44S P169S M296I OF FOOT-AND-MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE
 
Authors :  C. Ferrer-Orta, N. Verdaguer, R. Agudo, R. Perez-Luque
Date :  14 Jan 13  (Deposition) - 06 Feb 13  (Release) - 06 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Close Right Hand Conformation, Rna-Dependent Rna Polymerase, 3D Polymerase, Transferase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Agudo, C. Ferrer-Orta, A. Arias, I. De La Higuera, C. Perales, R. Perez-Luque, N. Verdaguer, E. Domingo
A Multi-Step Process Of Viral Adaptation To A Mutagenic Nucleoside Analogue By Modulation Of Transition Types Leads To Extinction-Escape.
Plos Pathog. V. 6 01072 2010
PubMed-ID: 20865120  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1001072

(-) Compounds

Molecule 1 - 3D POLYMERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21 PLYS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: 3D
    Mutation: YES
    Organism Scientific: FOOT-AND-MOUTH DISEASE VIRUS - TYPE C
    Organism Taxid: 12116
    Strain: C-S8C1
 
Molecule 2 - RNA (5'-R(*AP*UP*GP*GP*GP*CP*C)-3')
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: SYNTHESIZE BY A COMMERCIAL FIRM
    Synthetic: YES
 
Molecule 3 - RNA (5'-R(*GP*GP*CP*CP*C)-3')
    Chains: C
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: SYNTHESIZE BY A COMMERCIAL FIRM
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:119 -Pro A:120

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:476
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee.......eee..hhhhhh..eee..............hhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh...............hhhhh..hhhh.ee....eehhhhhhhhhhhhh......eeeee...eeehhhhhh....eeee.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhhhhh..hhhhhhhhh..eeeeeeeeeeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhhhheeeee..eeeeee....hhhhhhhhhhh....eee............hhhh.ee..eeeee......eeee.hhhhhhhhhheee..hhhhhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iqx A   1 GLIVDTRDVEERVHVMRKTKLAPTVAHGVFNPEFGPAALSNKDSRLNEGVVLDEVIFSKHKGDTKMSAEDKALFRRCAADYASRLHSVLGTANAPLSIYEAIKGVDGLDAMEPDTAPGLPWALQGKRRGALIDFENGTVGPEVEAALKLMEKREYKFACQTFLKDEIRSMEKVRAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAQYRNVWDVDYSAFDANHCSDAMNIMFEEVFRTEFGFHPNAEWILKTLVNTEHAYENKRITVEGGIPSGCSATSIINTILNNIYVLYALRRHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGFVLGHSITDVTFLKRHFHMDYGTGFYKPVMASKTLEAILSFARRGTIQEKLISVAGLAVHSGPDEYRRLFEPFQGLFEIPSYRSLYLRWVNAVCGDAAALAHH 476
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Chain B from PDB  Type:RNA  Length:7
                                       
                 4iqx B 903 AUGGGCC 909


Chain C from PDB  Type:RNA  Length:5
                                     
                 4iqx C 916 GGCCC 920
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IQX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IQX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IQX)

(-) Gene Ontology  (37, 37)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu A:119 - Pro A:120   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9QCE4_9PICO | Q9QCE4: 1u09 1wne 2d7s 2e9r 2e9t 2e9z 2ec0 3nky 3nl0 3nma

(-) Related Entries Specified in the PDB File

3nky 3nl0 3nma