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(-) Description

Title :  CRYSTAL STRUCTURE OF SPLD PROTEASE FROM STAPHYLOCOCCUS AUREUS AT 1.56 A RESOLUTION
 
Authors :  M. Zdzalik, M. Kalinska, P. Cichon, M. Wysocka, J. Stec-Niemczyk, H. R. Stennicke, A. Jabaiah, M. Markiewicz, B. Wladyka, P. S. Daughert A. Lesner, K. Rolka, A. Dubin, J. Potempa, G. Dubin
Date :  04 Jan 13  (Deposition) - 30 Oct 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.56
Chains :  Asym./Biol. Unit :  A
Keywords :  Chymotrypsin-Like Protease, Serine Endopeptidase, Extracellular Staphylococcal Proteases, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Zdzalik, M. Kalinska, M. Wysocka, J. Stec-Niemczyk, P. Cichon, N. Stach, N. Gruba, H. R. Stennicke, A. Jabaiah, M. Markiewicz, S. Kedracka-Krok, B. Wladyka, P. S. Daugherty, A. Lesner, K. Rolka, A. Dubin, J. Potempa, G. Dubin
Biochemical And Structural Characterization Of Spld Proteas From Staphylococcus Aureus.
Plos One V. 8 76812 2013
PubMed-ID: 24130791  |  Reference-DOI: 10.1371/JOURNAL.PONE.0076812

(-) Compounds

Molecule 1 - SERINE PROTEASE SPLD
    Chains: A
    EC Number: 3.4.21.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 37-239
    Gene: SAOUHSC_01938, SPLD
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
    Organism Taxid: 93061
    Strain: NCTC 8325

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4INK)

(-) Sites  (0, 0)

(no "Site" information available for 4INK)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4INK)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ala A:13 -Pro A:14
2Gln A:90 -Pro A:91

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4INK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4INK)

(-) Exons   (0, 0)

(no "Exon" information available for 4INK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains d4inka_ A: automated matches                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.......hhh.eee....eeee....eeeehhhhhh......eeee...........eeeeeeeee.......eeeee..........hhhhh..............eeeeee...........eeeeeeeeeee..eeee...........eee.....eeeeeeee.........eeeee.hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ink A   1 ENSVKLITNTNVAPYSGVTWMGAGTGFVVGNHTIITNKHVTYHMKVGDEIKAHPNGFYNNGGGLYKVTKIVDYPGKEDIAVVQVEEKSTQPKGRKFKDFTSKFNIASEAKENEPISVIGYPNPNGNKLQMYESTGKVLSVNGNIVTSDAVVQPGSSGSPILNSKREAIGVMYASDKPTGESTRSFAVYFSPEIKKFIADNLDK 203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4INK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4INK)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:13 - Pro A:14   [ RasMol ]  
    Gln A:90 - Pro A:91   [ RasMol ]  
 

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  4ink
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  SPLD_STAA8 | Q2FXC5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SPLD_STAA8 | Q2FXC5: 4inl

(-) Related Entries Specified in the PDB File

4inl