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(-) Description

Title :  CRYSTAL STRUCTURE OF FRUCTURONATE REDUCTASE (YDFI) FROM E. COLI CFT073 (EFI TARGET EFI-506389) COMPLEXED WITH NADH AND D-MANNONATE
 
Authors :  T. Lukk, D. Wichelecki, H. J. Imker, J. A. Gerlt, S. K. Nair
Date :  02 Jan 13  (Deposition) - 23 Jan 13  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Rossmann Fold, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Wichelecki, T. Lukk, H. J. Imker, S. K. Nair, J. A. Gerlt
Crystal Structure Of Fructuronate Reductase (Ydfi) From E. Coli Cft073 (Efi Target Efi-506389) Complexed With Nadh And D-Mannonate
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL OXIDOREDUCTASE YDFI
    Chains: A
    EC Number: 1.-.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: C1968, YDFI
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 199310
    Strain: CFT073

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1CS21Ligand/IonD-MANNONIC ACID
2NAI1Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
3SO41Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:185 , ASP A:224 , ARG A:225 , LYS A:289 , ASN A:294 , HIS A:297 , HIS A:362 , LYS A:374 , ARG A:378 , NAI A:502 , HOH A:698 , HOH A:713 , HOH A:920BINDING SITE FOR RESIDUE CS2 A 501
2AC2SOFTWAREGLY A:29 , PHE A:30 , GLY A:31 , ALA A:32 , PHE A:33 , ASN A:59 , ILE A:61 , GLY A:62 , THR A:124 , ILE A:125 , THR A:126 , GLY A:129 , ASP A:184 , ASN A:185 , VAL A:223 , ARG A:225 , VAL A:227 , CS2 A:501 , HOH A:614 , HOH A:620 , HOH A:627 , HOH A:645 , HOH A:710 , HOH A:734 , HOH A:771 , HOH A:822 , HOH A:933 , HOH A:940BINDING SITE FOR RESIDUE NAI A 502
3AC3SOFTWARETYR A:305 , GLN A:310 , ARG A:363 , HOH A:619 , HOH A:1039BINDING SITE FOR RESIDUE SO4 A 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IM7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IM7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IM7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IM7)

(-) Exons   (0, 0)

(no "Exon" information available for 4IM7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:483
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4im7a1 A:5-280 automated matches                                                                                                                                                                                                                                                   d4im7a2 A:281-487 automated matches                                                                                                                                                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.......hhhhheeeeeee..hhhhhhhhhhhhhhhhhhh...eeeeeee...hhhhhhhhhh....eeeeee....eeeeee..eeeeee....hhhhhhhhhh.....eeee..hhhhhh...........hhhhhhhhhh.....hhhhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee......hhhhhhhhhhhhh......eee....eeeee........hhhhhh.eee..hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh...............hhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4im7 A   5 HLLSAKATLPVYDRNNLAPRIVHLGFGAFHRAHQGVYADILATEHFSDWGYYEVNLIGGEQQIADLQQQDNLYTVAEMSADAWTARVVGVVKKALHVQIDGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLDHPMVVADVQNPHQPKTATGVIVEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAQAIDVKLAQWIEDNVTFPSTMVDRIVPAVTEDTLAKIEQLTGVRDAAGVACEPFRQWVIEDNFVAGRPEWEKAGAELVSDVLPYEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMEDEHYRHAAYTLMLQEQAPTLKVQGVDLQDYANRLIERYSNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKFDLLALGVAGWMRYVGGVDEQGNPIEISDPLLPVIQKAVQSSAEGTARVQSLLAIKAIFGDDLPGNSLFTTKVTEAYLSLLAHGAKATVAKYSVK 487
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IM7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IM7)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4IM7)

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