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(-) Description

Title :  STRUCTURE OF MCCF IN COMPLEX WITH GLUTAMYL SULFAMOYL INOSINE
 
Authors :  V. Agarwal, S. K. Nair
Date :  20 Dec 12  (Deposition) - 25 Dec 13  (Release) - 25 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Carboxypeptidase, Esi, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Agarwal, S. K. Nair
Structure Of Mccf With Substrate Analogs
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MCCF
    Chains: A, B
    EC Number: 3.4.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET19
    Expression System Strain: ROSETTA2(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MCCF
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: MICROCIN C7 SELF-IMMUNITY PROTEIN MCCF

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 15)

Asymmetric/Biological Unit (2, 15)
No.NameCountTypeFull Name
11EI2Ligand/Ion5'-O-(L-ALPHA-GLUTAMYLSULFAMOYL)INOSINE
2EDO13Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE A:90 , GLY A:91 , GLY A:92 , ASP A:119 , SER A:183 , TRP A:186 , ASN A:218 , ASN A:220 , THR A:221 , ARG A:246 , LYS A:247 , GLU A:277 , HIS A:311 , EDO A:408 , HOH A:511 , HOH A:512 , HOH A:600 , HOH A:605 , HOH A:686 , HOH A:742 , HOH A:794BINDING SITE FOR RESIDUE 1EI A 401
02AC2SOFTWARELYS A:260BINDING SITE FOR RESIDUE EDO A 402
03AC3SOFTWARETRP A:226 , GLU A:233 , ILE A:234 , LYS A:267 , HOH A:597 , HOH A:676BINDING SITE FOR RESIDUE EDO A 403
04AC4SOFTWARELYS A:161 , ARG A:165 , SER A:168 , ILE A:170 , ASP B:329 , ASN B:330BINDING SITE FOR RESIDUE EDO A 404
05AC5SOFTWAREARG A:165 , GLN A:167 , GLY A:169 , TYR A:171 , ILE A:335 , GLU A:337BINDING SITE FOR RESIDUE EDO A 405
06AC6SOFTWAREGLU A:243 , ASP A:244 , GLY A:274 , HIS A:276 , PRO A:288 , HOH A:534BINDING SITE FOR RESIDUE EDO A 406
07AC7SOFTWAREVAL A:78 , ALA A:106 , ALA A:109 , ASN A:110BINDING SITE FOR RESIDUE EDO A 407
08AC8SOFTWAREGLY A:92 , ASP A:93 , 1EI A:401 , HOH A:742BINDING SITE FOR RESIDUE EDO A 408
09AC9SOFTWAREILE B:90 , GLY B:91 , GLY B:92 , TYR B:117 , ASP B:119 , SER B:183 , TRP B:186 , ASN B:220 , ARG B:246 , LYS B:247 , GLU B:277 , HIS B:311 , HOH B:505 , HOH B:507 , HOH B:543 , HOH B:616 , HOH B:724BINDING SITE FOR RESIDUE 1EI B 401
10BC1SOFTWAREGLU B:243 , ASP B:244 , GLY B:274 , HIS B:276 , PRO B:288 , HOH B:539BINDING SITE FOR RESIDUE EDO B 402
11BC2SOFTWARETRP B:226 , GLU B:233 , ILE B:234 , HOH B:580 , HOH B:701BINDING SITE FOR RESIDUE EDO B 403
12BC3SOFTWARETRP A:230 , LYS B:260 , ARG B:263BINDING SITE FOR RESIDUE EDO B 404
13BC4SOFTWAREASP A:329 , ASN A:330 , HOH A:761 , LYS B:161 , ARG B:165 , SER B:168 , ILE B:170 , HOH B:815BINDING SITE FOR RESIDUE EDO B 405
14BC5SOFTWAREPRO B:12 , ALA B:14 , ASP B:17BINDING SITE FOR RESIDUE EDO B 406
15BC6SOFTWAREARG B:165 , GLN B:167 , GLY B:169 , ILE B:170 , TYR B:171 , ILE B:335 , GLU B:337 , GLN B:338 , TYR B:339BINDING SITE FOR RESIDUE EDO B 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IIY)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Pro A:149 -Pro A:150
2His A:313 -Pro A:314
3Pro B:149 -Pro B:150
4His B:313 -Pro B:314

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IIY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IIY)

(-) Exons   (0, 0)

(no "Exon" information available for 4IIY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....hhhhhhhhhhhhhhhhhhhh..eeee.............hhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh..eee..hhhhhhh...hhhhhhhhhhhhhhhh.....ee.....ee..................ee...eee...eeeeeeeeeehhhhh...............eeeee....hhhhhhhhhhhhhhhhhhhh..eeeee............hhhhhhhhhhh.....eeeee..........eee..eeeee....eeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iiy A   7 PLLAAPLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGGDNSNSLLPFLDYDAIIANPKIIIGYADTTALLAGIYAKTGLITFYGPALIPSFGEHPPLVDITYESFIKILTRKQSGIYTYTLPEKWSDESINWNENKILRPKKLYKNNCAFYGSGKVEGRVIGGNLNTLTGIWGSEWMPEIRNGDILFIEDSRKSIATVERLFSMLKLNRVFDKVSAIILGKHELFDCAGSKRRPYEVLTEVLDGKQIPVLDGFDCSHTHPMLTLPLGVKLAIDFDNKNISITEQYLS 341
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336     


Chain B from PDB  Type:PROTEIN  Length:337
                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....hhhhhhhhhhhhhhhhhhhh..eeee.............hhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh..eee..hhhhhhh...hhhhhhhhhhhhhhhh.....ee.....ee..................ee...eee...eeeeeeeeeehhhhh...............eeeee....hhhhhhhhhhhhhhhhhhhhh.eeeee............hhhhhhhhhhh.....eeeee..........eee..eeeee....eeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iiy B   7 PLLAAPLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGGDNSNSLLPFLDYDAIIANPKIIIGYADTTALLAGIYAKTGLITFYGPALIPSFGEHPPLVDITYESFIKILTRKQSGIYTYTLPEKWSDESINWNENKILRPKKLYKNNCAFYGSGKVEGRVIGGNLNTLTGIWGSEWMPEIRNGDILFIEDSRKSIATVERLFSMLKLNRVFDKVSAIILGKHELFDCAGSKRRPYEVLTEVLDGKQIPVLDGFDCSHTHPMLTLPLGVKLAIDFDNKNISITEQYLSTE 343
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IIY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IIY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IIY)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  4iiy
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  MCCF_ECOLX | Q47511
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  Q2KKH9_ECOLX | Q2KKH9
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  3.4.-.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MCCF_ECOLX | Q47511: 3tla 3tlb 3tlc 3tle 3tlg 3tly 3tlz 4iix
        Q2KKH9_ECOLX | Q2KKH9: 3tla 3tlb 3tlc 3tle 3tlg 3tly 3tlz 4iix

(-) Related Entries Specified in the PDB File

4iix