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Title :   CRYSTAL STRUCTURE OF A PUTATIVE TETR FAMILY TRANSCRIPTIONAL REGULATOR FROM SACCHAROMONOSPORA VIRIDIS DSM 43017

Authors :   E. V. Filippova, G. Minasov, L. Shuvalova, O. Kiryukhina, R. Jedrzejcz A. Joachimiak, W. F. Anderson, Midwest Center For Structural Gen (Mcsg)

Date :   10 Dec 12 (Deposition) - 02 Jan 13 (Release) - 02 Jan 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym./Biol. Unit : A,B

Keywords :   Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Transcriptional Regulator, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. V. Filippova, G. Minasov, L. Shuvalova, O. Kiryukhina, R. Jedrzejczak, A. Joachimiak, W. F. Anderson
Crystal Structure Of A Putative Tetr Family Transcriptional Regulator From Saccharomonospora Viridis Dsm 43017
To Be Published
PubMed: search

Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG68
	Expression System Strain	:	BL21(DE3) MAGIC
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	SVIR_16270
	Organism Scientific	:	SACCHAROMONOSPORA VIRIDIS
	Organism Taxid	:	471857
	Strain	:	DSM 43017

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 11)

Asymmetric/Biological Unit (5, 11)

No.	Name	Count	Type	Full Name
1	B3P	2	Ligand/Ion	2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2	BME	2	Ligand/Ion	BETA-MERCAPTOETHANOL
3	BR	1	Ligand/Ion	BROMIDE ION
4	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
5	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Sites (7, 7)

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:254 , GLN A:257 , VAL A:258 , CYS A:265 , SER A:266 , MSE A:270	BINDING SITE FOR RESIDUE BME A 301
2	AC2	SOFTWARE	GLN A:180 , TRP A:194 , ASP A:252 , HOH A:409 , HOH A:415 , HOH A:432	BINDING SITE FOR RESIDUE B3P A 302
3	AC3	SOFTWARE	ARG A:227 , ARG B:227	BINDING SITE FOR RESIDUE BR A 303
4	AC4	SOFTWARE	ARG A:107 , LEU A:108 , ARG A:111 , GLU A:125 , ARG B:111	BINDING SITE FOR RESIDUE EDO A 304
5	AC5	SOFTWARE	VAL B:258 , CYS B:265 , SER B:266 , HIS B:269 , MSE B:270	BINDING SITE FOR RESIDUE BME B 301
6	AC6	SOFTWARE	GLN B:180 , TRP B:194 , ILE B:251 , ASP B:252 , HOH B:406 , HOH B:415 , HOH B:443	BINDING SITE FOR RESIDUE B3P B 302
7	AC7	SOFTWARE	ARG A:111 , ARG B:107 , LEU B:108 , ARG B:112 , GLU B:125	BINDING SITE FOR RESIDUE EDO B 303

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ich A  93 PQSEARRRILETAWRLIARRGYHNVRIHDIASELGTSNATIHYHFPSKKDILLEALRRNVKLAFDRQVAELHTIADARERLVRLVELQLPTPGLLRDEWSVWLQVWTESTLNPKIRDLYNDAYDRWYQTIAmTIRTGQKQGVFRDQDADELATRLSALIDGLGIQVLTGKRGCSVDHmRQHLNDFIEHNIVER 285
                                   102       112       122       132       142       152       162       172       182       192       202       212       222 |     232       242       252       262       272       282   
                                                                                                                                                             224-MSE                                       270-MSE

Chain B from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ich B  94 QSEARRRILETAWRLIARRGYHNVRIHDIASELGTSNATIHYHFPSKKDILLEALRRNVKLAFDRQVAELHTIADARERLVRLVELQLPTPGLLRDEWSVWLQVWTESTLNPKIRDLYNDAYDRWYQTIAmTIRTGQKQGVFRDQDADELATRLSALIDGLGIQVLTGKRGCSVDHmRQHLNDFIEHNIVERR 286
                                   103       113       123       133       143       153       163       173       183       193       203       213       223|      233       243       253       263      |273       283   
                                                                                                                                                            224-MSE                                       270-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

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