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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SMCHEAD BOUND TO THE C-WINGED HELIX DOMAIN OF SCPA
 
Authors :  H. C. Shin, Y. M. Soh, B. H. Oh
Date :  05 Dec 12  (Deposition) - 30 Jan 13  (Release) - 10 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Winged-Helix Domain And Smc Head Domain, Chromosome Condensation, Scpb, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Burmann, H. C. Shin, J. Basquin, Y. M. Soh, V. Gimenez-Oya, Y. G. Kim, B. H. Oh, S. Gruber
An Asymmetric Smc-Kleisin Bridge In Prokaryotic Condensin.
Nat. Struct. Mol. Biol. V. 20 371 2013
PubMed-ID: 23353789  |  Reference-DOI: 10.1038/NSMB.2488

(-) Compounds

Molecule 1 - CHROMOSOME PARTITION PROTEIN SMC
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Strain: B834 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: HEAD DOMAIN, UNP RESIDUES 2-182, 1006-1172
    Gene: PF1843, SMC
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 186497
    Strain: DSM 3638
 
Molecule 2 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PPROEX HTA
    Expression System Strain: BL21 (DE3) RIPL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: C-WHD, UNP RESIDUES126-212
    Gene: PF1842
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 186497
    Strain: DSM 3638
    Synonym: SEGREGATION AND CONDENSATION PROTEIN A

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 21)

Asymmetric/Biological Unit (2, 21)
No.NameCountTypeFull Name
1MSE18Mod. Amino AcidSELENOMETHIONINE
2PO43Ligand/IonPHOSPHATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:1102 , HOH A:1324 , HOH A:1338 , HIS B:1102BINDING SITE FOR RESIDUE PO4 A 1201
2AC2SOFTWAREALA A:34 , GLY A:36 , SER A:37 , GLY A:38 , LYS A:39 , SER A:40 , HOH A:1305 , HOH A:1316 , HOH A:1317 , SER B:1070BINDING SITE FOR RESIDUE PO4 A 1202
3AC3SOFTWARESER A:1070 , ALA B:34 , ASN B:35 , GLY B:36 , SER B:37 , GLY B:38 , LYS B:39 , SER B:40 , HOH B:1303 , HOH B:1305 , HOH B:1309BINDING SITE FOR RESIDUE PO4 B 1201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I99)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4I99)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I99)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I99)

(-) Exons   (0, 0)

(no "Exon" information available for 4I99)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:323
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhh...eeee....eeeee.....hhhhhhhhhhhhh....hhhhh..hhhhhh............eeeeeeee...........eeeeeeee.....eeeee..eeehhhhhhhhhhhh........ee...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee....hhhhh.eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhh..eeeee..hhhhhh...eeeeee......eeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4i99 A    2 PYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAmRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAmISPDGYNIVLQGDITKFIKmSPLERRLLIDDISGIKEKKNVFmRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRIEAmSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVmmANADKIIGVSmRDGVSKVVSLSLEKAm 1161
                                    11        21        31        41        51      | 61        71        81        91       101       111       121       131  |    141       151  |    161      1008     |1018      1028      1038      1048      1058      1068|     1078      1088      1098      1108      1118      1128    ||1138      1148      1158  |
                                                                                   58-MSE                                                                     134-MSE             154-MSE        169|      |                                                   1069-MSE                                                        1133-MSE    1145-MSE        1161-MSE
                                                                                                                                                                                                 1007      |                                                                                                                    1134-MSE                       
                                                                                                                                                                                                        1014-MSE                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:326
                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhh...eeee....eeeee.....hhhhhhhhhhhhh....hhhhh..hhhhhh............eeeeeeee...........eeeeeeee.....eeeee..eeehhhhhhhhhhhh........ee.....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee....hhhhh.eeeeee............hhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhh...eeeee..hhhhhhh..eeeeeee....eeeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4i99 B    2 PYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAmRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAmISPDGYNIVLQGDITKFIKmSPLERRLLIDDISGIAKEKKNVFmRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRIEAmSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVmmANADKIIGVSmRDGVSKVVSLSLEKAmKI 1163
                                    11        21        31        41        51      | 61        71        81        91       101       111       121       131  |    141       151  |    161      1007      1017      1027      1037      1047      1057      1067 |    1077      1087      1097      1107      1117      1127     |1137      1147      1157   |  
                                                                                   58-MSE                                                                     134-MSE             154-MSE         170|      |                                                   1069-MSE                                                        1133-MSE    1145-MSE        1161-MSE
                                                                                                                                                                                                  1007      |                                                                                                                    1134-MSE                         
                                                                                                                                                                                                         1014-MSE                                                                                                                                                 


Chain C from PDB  Type:PROTEIN  Length:70
                                                                                                       
               SCOP domains ---------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh..ee.hhhh...hhhhhhhhhhhhhhhhhh..eeee........eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                4i99 C  143 DIEKYVEELYKVVKKIYEKTGTPIKFWDLVPDVEPKIIARTFLYLLFLENMGRVEIIQEEPFGEILVVPM  212
                                   152       162       172       182       192       202       212


Chain D from PDB  Type:PROTEIN  Length:69
                                                                                                      
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh..ee.hhhh...hhhhhhhhhhhhhhhhhhh.eeeee......eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                4i99 D  144 IEKYVEELYKVVKKIYEKTGTPIKFWDLVPDVEPKIIARTFLYLLFLENMGRVEIIQEEPFGEILVVPM  212
                                   153       163       173       183       193       203
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4I99)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I99)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I99)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        SMC_PYRFU | Q8TZY2: 1xew 1xex 3kta 3nwc 4rsj

(-) Related Entries Specified in the PDB File

4i98