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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN SCPA(RESIDUES 1-160)-SCPB(RESIDUES 1-183)
 
Authors :  H. C. Shin, B. H. Oh
Date :  05 Dec 12  (Deposition) - 30 Jan 13  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Scpa, Scpb, Dna Condensation, Smc, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Burmann, H. C. Shin, J. Basquin, Y. M. Soh, V. Gimenez-Oya, Y. G. Kim, B. H. Oh, S. Gruber
An Asymmetric Smc-Kleisin Bridge In Prokaryotic Condensin
Nat. Struct. Mol. Biol. V. 20 371 2013
PubMed-ID: 23353789  |  Reference-DOI: 10.1038/NSMB.2488

(-) Compounds

Molecule 1 - SEGREGATION AND CONDENSATION PROTEIN A
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCDF DUET
    Expression System Strain: B834 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-160
    Gene: SCPA, SPP_1876
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 488223
    Strain: P1031
 
Molecule 2 - SEGREGATION AND CONDENSATION PROTEIN B
    Chains: B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCDF DUET
    Expression System Strain: B834 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SCPB, SPP_1875
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 488223
    Strain: P1031

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric/Biological Unit (1, 7)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4I98)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I98)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gln B:102 -Pro B:103
2Gln C:102 -Pro C:103

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I98)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I98)

(-) Exons   (0, 0)

(no "Exon" information available for 4I98)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i98 A   6 KDFEGPLDLLLHLVSKYQmDIYDVPITEVIEQYLAYVSTLQAmRLEVTGEYmVmASQLmLIKSRKLLPKVTDLGDDLEQDLLSQIEEYRKFKLLGEHLEAKHQERAQYYSKAPTELIYEDAELVHDKTTIDLFLAFSNILAKKKEEF 155
                                    15        25        35        45  |     55 | |    65        75|       88        98       108       118       128       138       148       
                                             24-MSE                  48-MSE   57-MSE  |         75|                                                                            
                                                                                59-MSE|          79                                                                            
                                                                                     64-MSE                                                                                    


Chain B from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh....eehhhhhhhhh.hhhhhhhhhhhhhhhhhhh....eeeeee..eeeeee...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.eehhhhhhhhh..hhhhhhhhhhh..eeeeee.......eeeeehhhhhhhhh..hhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i98 B   2 STLAKIEALLFVAGEDGIRVRQLAELLSLPPTGIQQSLGKLAQKYEKDPDSSLALIETSGAYRLVTKPQFAEILKEYSKAPINQSLSRAALETLSIIAYKQPITRIEIDAIRGVNSSGALAKLQAFDLIKEDGKKEVLGRPNLYVTTDYFLDYmGINHLEELPVIDE 168
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151   |   161       
                                                                                                                                                                                   155-MSE         


Chain C from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhh....eeeeee..eeeeee...hhhhhhhhh........hhhhhhhhhhhhhhh..hhhhhhhhhh..hhhhhhhhhhh....eeee.......eee..hhhhhhhhh..hhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i98 C   2 STLAKIEALLFVAGEDGIRVRQLAELLSLPPTGIQQSLGKLAQKYEKDPDSSLALIETSGAYRLVTKPQFAEILKEYSKAPINQSLSRAALETLSIIAYKQPITRIEIDAIRGVNSSGALAKLQAFDLIKEDGKKEVLGRPNLYVTTDYFLDYmGINHLEELPVID 167
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151   |   161      
                                                                                                                                                                                   155-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4I98)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I98)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I98)

(-) Gene Ontology  (6, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gln B:102 - Pro B:103   [ RasMol ]  
    Gln C:102 - Pro C:103   [ RasMol ]  
 

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  4i98
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

4i99