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(-) Description

Title :  HUMAN CYTOCHROME P450 1A1 IN COMPLEX WITH ALPHA-NAPHTHOFLAVONE
 
Authors :  A. A. Walsh, E. E. Scott
Date :  04 Dec 12  (Deposition) - 27 Feb 13  (Release) - 22 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Monooxygenase, Cytochrome P450, P450, Cyp1A1, P450 1A1, Heme, Oxidoreductase, Aryl Hydrocarbon Hydroxylase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Walsh, G. D. Szklarz, E. E. Scott
Human Cytochrome P450 1A1 Structure And Utility In Understanding Drug And Xenobiotic Metabolism.
J. Biol. Chem. V. 288 12932 2013
PubMed-ID: 23508959  |  Reference-DOI: 10.1074/JBC.M113.452953

(-) Compounds

Molecule 1 - CYTOCHROME P450 1A1
    Chains: A, B, C, D
    EC Number: 1.14.14.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PKK
    Expression System Strain: TOPP3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 35-512
    Gene: CYP1A1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CYPIA1, CYTOCHROME P450 FORM 6, CYTOCHROME P450-C, CYTOCHROME P450-P1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric Unit (3, 11)
No.NameCountTypeFull Name
1BHF4Ligand/Ion2-PHENYL-4H-BENZO[H]CHROMEN-4-ONE
2HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3NO33Ligand/IonNITRATE ION
Biological Unit 1 (3, 4)
No.NameCountTypeFull Name
1BHF1Ligand/Ion2-PHENYL-4H-BENZO[H]CHROMEN-4-ONE
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3NO32Ligand/IonNITRATE ION
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
1BHF1Ligand/Ion2-PHENYL-4H-BENZO[H]CHROMEN-4-ONE
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3NO31Ligand/IonNITRATE ION
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1BHF1Ligand/Ion2-PHENYL-4H-BENZO[H]CHROMEN-4-ONE
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3NO3-1Ligand/IonNITRATE ION
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
1BHF1Ligand/Ion2-PHENYL-4H-BENZO[H]CHROMEN-4-ONE
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3NO3-1Ligand/IonNITRATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:106 , SER A:122 , TRP A:131 , ARG A:135 , ALA A:317 , GLY A:318 , THR A:321 , PHE A:381 , VAL A:382 , THR A:385 , ILE A:386 , HIS A:388 , ILE A:449 , PHE A:450 , ARG A:455 , CYS A:457 , GLY A:459 , ALA A:463 , HOH A:765BINDING SITE FOR RESIDUE HEM A 601
02AC2SOFTWAREILE A:115 , SER A:116 , PHE A:224 , LEU A:312 , ASP A:313 , GLY A:316 , ALA A:317 , ASP A:320BINDING SITE FOR RESIDUE BHF A 602
03AC3SOFTWARELEU A:37 , TYR A:400BINDING SITE FOR RESIDUE NO3 A 603
04AC4SOFTWARELEU A:55 , ASN A:58 , LEU A:61 , ARG A:65BINDING SITE FOR RESIDUE NO3 A 604
05AC5SOFTWAREARG B:106 , SER B:122 , TRP B:131 , ARG B:135 , ALA B:317 , GLY B:318 , THR B:321 , PHE B:381 , VAL B:382 , THR B:385 , ILE B:386 , HIS B:388 , ILE B:449 , PHE B:450 , ARG B:455 , CYS B:457 , ILE B:458 , ALA B:463BINDING SITE FOR RESIDUE HEM B 601
06AC6SOFTWARESER B:116 , PHE B:224 , LEU B:312 , GLY B:316 , ALA B:317 , ASP B:320BINDING SITE FOR RESIDUE BHF B 602
07AC7SOFTWARELEU B:55 , ASN B:58 , LEU B:61 , ALA B:62 , ARG B:65BINDING SITE FOR RESIDUE NO3 B 603
08AC8SOFTWAREARG C:106 , SER C:122 , TRP C:131 , ARG C:135 , LEU C:314 , ALA C:317 , GLY C:318 , THR C:321 , THR C:385 , ILE C:386 , HIS C:388 , GLN C:411 , ILE C:449 , PHE C:450 , ARG C:455 , CYS C:457 , ALA C:463BINDING SITE FOR RESIDUE HEM C 600
09AC9SOFTWAREILE C:115 , SER C:116 , PHE C:224 , ASN C:255 , LEU C:312 , GLY C:316 , ASP C:320BINDING SITE FOR RESIDUE BHF C 601
10BC1SOFTWAREARG D:106 , SER D:122 , TRP D:131 , ALA D:317 , THR D:321 , PHE D:381 , VAL D:382 , THR D:385 , ILE D:386 , HIS D:388 , GLN D:411 , ILE D:449 , PHE D:450 , ARG D:455 , CYS D:457 , ILE D:458 , GLY D:459 , ALA D:463BINDING SITE FOR RESIDUE HEM D 600
11BC2SOFTWARESER D:116 , PHE D:224 , LEU D:312 , GLY D:316 , ALA D:317 , PHE D:319 , ASP D:320 , LEU D:496BINDING SITE FOR RESIDUE BHF D 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I8V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4I8V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I8V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I8V)

(-) Exons   (0, 0)

(no "Exon" information available for 4I8V)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:477
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhh.hhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhh.hhhhhh....hhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh......hhhhhhhhh...hhhhhhh..hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.......ee....eee..eee....eeeehhhhhhh...........hhhhhh......hhhhhh......hhhhh..hhhhhhhhhhhhhhhhhhheeee.........................eeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i8v A  36 GLKNPPGPWGWPLIGHMLTLGKNPHLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQALVRQGDDFKGRPDLYTFTLISNGQSMSFSPDSGPVWAARRRLAQNGLKSFSIASDPASSTSCYLEEHVSKEAEVLISTLQELMAGPGHFNPYRYVVVSVTNVICAICFGRRYDHNHQELLSLVNLNNNFGEVVGSGNPADFIPILRYLPNPSLNAFKDLNEKFYSFMQKMVKEHYKTFEKGHIRDITDSLIEHCQEKQLDENANVQLSDEKIINIVLDLFGAGFDTVTTAISWSLMYLVMNPRVQRKIQEELDTVIGRSRRPRLSDRSHLPYMEAFILETFRHSSFVPFTIPHSTTRDTSLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFLTPDGAIDKVLSEKVIIFGMGKRKCIGETIARWEVFLFLAILLQRVEFSVPLGVKVDMTPIYGLTMKHACCEHFQMQLRS 512
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       


Chain B from PDB  Type:PROTEIN  Length:472
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhh.hhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhh.hhhhhh....hhhhhh.............hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhh...hhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.......ee....eee..eee....eeeehhhhhhh...........hhhhhh......hhhhhh......hhhhh..hhhhhhhhhhhhhhhhhhheeee.........................eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i8v B  34 SKGLKNPPGPWGWPLIGHMLTLGKNPHLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQALVRQGDDFKGRPDLYTFTLISNGQSMSFSPDSGPVWAARRRLAQNGLKSFSIASDPASSTSCYLEEHVSKEAEVLISTLQELMAGPGHFNPYRYVVVSVTNVICAICFGRRYDHNHQELLSLVNLNNNFGEVVGSGNPADFIPILRYLPNPSLNAFKDLNEKFYSFMQKMVKEHYKTFEKGHIRDITDSLIEHCQEKVQLSDEKIINIVLDLFGAGFDTVTTAISWSLMYLVMNPRVQRKIQEELDTVIGRSRRPRLSDRSHLPYMEAFILETFRHSSFVPFTIPHSTTRDTSLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFLTPDGAIDKVLSEKVIIFGMGKRKCIGETIARWEVFLFLAILLQRVEFSVPLGVKVDMTPIYGLTMKHACCEHFQMQLRS 512
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510  
                                                                                                                                                                                                                                                                                            292|                                                                                                                                                                                                                    
                                                                                                                                                                                                                                                                                             300                                                                                                                                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:468
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............hhhhhh.hhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhh.hhhhh.....hhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh......hhhhhhhhh...hhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.......ee....ee....ee....eeeehhhhhhhh..........hhhhhh......hhhhhh......hhhhh..hhhhhhhhhhhhhhhhhhhh.................................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4i8v C  37 LKNPPGPWGWPLIGHMLTLGKNPHLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQALVRQGDDFKGRPDLYTFTLISNGQSMSFSPDSGPVWAARRRLAQNGLKSFSIASDPASSTSCYLEEHVSKEAEVLISTLQELMAGPGHFNPYRYVVVSVTNVICAICFGRRYDHNHQELLSLVNLNNNFGEVVGSGNPADFIPILRYLPNPSLNAFKDLNEKFYSFMQKMVKEHYKTFEKGHIRDITDSLIEHCQEKQLSDEKIINIVLDLFGAGFDTVTTAISWSLMYLVMNPRVQRKIQEELDTVIGRSRRPRLSDRSHLPYMEAFILETFRHSSFVPFTIPHSTTRDTSLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFLTPDGAIDKVLSEKVIIFGMGKRKCIGETIARWEVFLFLAILLQRVEFSVPLGVKVDMTPIYGLTMKHACCEHFQMQLRS 512
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286     ||304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504        
                                                                                                                                                                                                                                                                                         292|                                                                                                                                                                                                                   
                                                                                                                                                                                                                                                                                          301                                                                                                                                                                                                                   


Chain D from PDB  Type:PROTEIN  Length:467
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhh.hhhhhhhhhhhh...eeeeee..eeeeee.hhhhhhhhhh.hhhhhh....hhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh......hhhhhhhhh...hhhhhhh..hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.......ee....eee..eee....eeeehhhhhhhh..........hhhhhh......hhhhhh.............hhhhhhhhhhhhhhhhhhheeee.........................eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i8v D  37 LKNPPGPWGWPLIGHMLTLGKNPHLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQALVRQGDDFKGRPDLYTFTLISNGQSMSFSPDSGPVWAARRRLAQNGLKSFSIASDPASSTSCYLEEHVSKEAEVLISTLQELMAGPGHFNPYRYVVVSVTNVICAICFGRRYDHNHQELLSLVNLNNNFGEVVGSGNPADFIPILRYLPNPSLNAFKDLNEKFYSFMQKMVKEHYKTFEKGHIRDITDSLIEHCQEQLSDEKIINIVLDLFGAGFDTVTTAISWSLMYLVMNPRVQRKIQEELDTVIGRSRRPRLSDRSHLPYMEAFILETFRHSSFVPFTIPHSTTRDTSLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFLTPDGAIDKVLSEKVIIFGMGKRKCIGETIARWEVFLFLAILLQRVEFSVPLGVKVDMTPIYGLTMKHACCEHFQMQLRS 512
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286    || 305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       
                                                                                                                                                                                                                                                                                        291|                                                                                                                                                                                                                   
                                                                                                                                                                                                                                                                                         301
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4I8V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I8V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I8V)

(-) Gene Ontology  (70, 70)

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