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(-) Description

Title :  CRYSTAL STRUCTURE OF (3R)-HYDROXYMYRISTOYL-ACP DEHYDRATASE FROM NEISSERIA MENINGITIDIS FAM18
 
Authors :  Y. B. Khandokar, J. K. Forwood
Date :  02 Dec 12  (Deposition) - 16 Jan 13  (Release) - 16 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Fabz, Hot Dog Fold, Thioesterase, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. B. Khandokar, J. K. Forwood
Crystal Structure Of (3R)-Hydroxymyristoyl-Acp Dehydratase From Neisseria Meningitidis Fam18
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 3-HYDROXYACYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE FABZ
    Chains: A, C, B, D, E, F
    EC Number: 4.2.1.59
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG21
    Expression System Strain: BL21DE3PLYSE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FABZ, NMC0170
    Organism Scientific: NEISSERIA MENINGITIDIS
    Organism Taxid: 272831
    Strain: FAM18
    Synonym: (3R)-HYDROXYMYRISTOYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE, (3R)-HYDROXYMYRISTOYL-ACP DEHYDRASE, BETA-HYDROXYACYL-ACP DEHYDRATASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4I83)

(-) Sites  (0, 0)

(no "Site" information available for 4I83)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I83)

(-) Cis Peptide Bonds  (18, 18)

Asymmetric/Biological Unit
No.Residues
1Leu A:5 -Pro A:6
2Tyr A:20 -Pro A:21
3His A:53 -Phe A:54
4Leu C:5 -Pro C:6
5Tyr C:20 -Pro C:21
6His C:53 -Phe C:54
7Leu B:5 -Pro B:6
8Tyr B:20 -Pro B:21
9His B:53 -Phe B:54
10Leu D:5 -Pro D:6
11Tyr D:20 -Pro D:21
12His D:53 -Phe D:54
13Leu E:5 -Pro E:6
14Tyr E:20 -Pro E:21
15His E:53 -Phe E:54
16Leu F:5 -Pro F:6
17Tyr F:20 -Pro F:21
18His F:53 -Phe F:54

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I83)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I83)

(-) Exons   (0, 0)

(no "Exon" information available for 4I83)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains d4i83a_ A: automated matches                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eehhhhhhhh..........eeeeee...eeeeeee....hhhhhh........hhhhhhhhhhhhhhhhhhhhh.........eeeee..eee........eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4i83 A   3 VQLPIEAKDIQKLIPHRYPFLQLDRITAFEPMKTLTAIKNVSINEPQFQGHFPDLPVMPGVLIIEAMAQACGTLAILSEGGRKENEFFFFAGIDEARFKRQVIPGDQLVFEVELLTSRRGIGKFNAVAKVDGQVAVEAIIMCAK 146
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142    


Chain B from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains d4i83b_ B: automated matches                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eehhhhhhhh..........eeeeee...eeeeeee....hhhhhh........hhhhhhhhhhhhhhhhhhhhh.........eeeee..eee........eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4i83 B   3 VQLPIEAKDIQKLIPHRYPFLQLDRITAFEPMKTLTAIKNVSINEPQFQGHFPDLPVMPGVLIIEAMAQACGTLAILSEGGRKENEFFFFAGIDEARFKRQVIPGDQLVFEVELLTSRRGIGKFNAVAKVDGQVAVEAIIMCAK 146
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142    


Chain C from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains d4i83c_ C: automated matches                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eehhhhhhhh..........eeeeee...eeeeeee....hhhhhh........hhhhhhhhhhhhhhhhhhhhh.........eeeee..eee........eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4i83 C   3 VQLPIEAKDIQKLIPHRYPFLQLDRITAFEPMKTLTAIKNVSINEPQFQGHFPDLPVMPGVLIIEAMAQACGTLAILSEGGRKENEFFFFAGIDEARFKRQVIPGDQLVFEVELLTSRRGIGKFNAVAKVDGQVAVEAIIMCAK 146
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142    


Chain D from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains d4i83d_ D: automated matches                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eehhhhhhhh..........eeeeee...eeeeeee....hhhhhh........hhhhhhhhhhhhhhhhhhhhh.........eeeee..eee........eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4i83 D   3 VQLPIEAKDIQKLIPHRYPFLQLDRITAFEPMKTLTAIKNVSINEPQFQGHFPDLPVMPGVLIIEAMAQACGTLAILSEGGRKENEFFFFAGIDEARFKRQVIPGDQLVFEVELLTSRRGIGKFNAVAKVDGQVAVEAIIMCAK 146
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142    


Chain E from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains d4i83e_ E: automated matches                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eehhhhhhhh..........eeeeee...eeeeeee....hhhhhh........hhhhhhhhhhhhhhhhhhhhh.........eeeee..eee........eeeeeeeeeehhh.eeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4i83 E   3 VQLPIEAKDIQKLIPHRYPFLQLDRITAFEPMKTLTAIKNVSINEPQFQGHFPDLPVMPGVLIIEAMAQACGTLAILSEGGRKENEFFFFAGIDEARFKRQVIPGDQLVFEVELLTSRRGIGKFNAVAKVDGQVAVEAIIMCAK 146
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142    


Chain F from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains d4i83f_ F: automated matches                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eehhhhhhhh..........eeeeee...eeeeeee....hhhhhh........hhhhhhhhhhhhhhhhhhhhh.........eeeee..eee........eeeeeeeeeeee..eeeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4i83 F   3 VQLPIEAKDIQKLIPHRYPFLQLDRITAFEPMKTLTAIKNVSINEPQFQGHFPDLPVMPGVLIIEAMAQACGTLAILSEGGRKENEFFFFAGIDEARFKRQVIPGDQLVFEVELLTSRRGIGKFNAVAKVDGQVAVEAIIMCAK 146
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I83)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I83)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    His A:53 - Phe A:54   [ RasMol ]  
    His B:53 - Phe B:54   [ RasMol ]  
    His C:53 - Phe C:54   [ RasMol ]  
    His D:53 - Phe D:54   [ RasMol ]  
    His E:53 - Phe E:54   [ RasMol ]  
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