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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN NUP43
 
Authors :  C. Xu, W. Tempel, Z. Li, H. He, A. K. Wernimont, C. Bountra, C. H. Arrowsmi A. M. Edwards, J. Min, Structural Genomics Consortium (Sgc)
Date :  30 Nov 12  (Deposition) - 27 Feb 13  (Release) - 10 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Structural Genomics Consortium, Sgc, Wd40 Repeat, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Xu, Z. Li, H. He, A. Seitova, A. Wernimont, Y. Li, P. Loppnau, J. Min
Crystal Structure Of Human Nuclear Pore Complex Component Nup43.
Febs Lett. V. 589 3247 2015
PubMed-ID: 26391640  |  Reference-DOI: 10.1016/J.FEBSLET.2015.09.008

(-) Compounds

Molecule 1 - NUCLEOPORIN NUP43
    Chains: A, B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFBOH-LIC
    Expression System Taxid: 7108
    Expression System Vector Type: PLASMID
    Gene: NUP43
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NUP107-160 SUBCOMPLEX SUBUNIT NUP43, P42
 
Molecule 2 - FLOATING CHAIN, UNKNOWN SEQUENCE
    Chains: C
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFBOH-LIC
    Expression System Taxid: 7108
    Expression System Vector Type: PLASMID
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 41)

Asymmetric Unit (2, 41)
No.NameCountTypeFull Name
1UNK9Mod. Amino Acid
2UNX32Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (1, 13)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid
2UNX13Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 2 (1, 19)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid
2UNX19Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid
2UNX-1Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (0, 0)

(no "Site" information available for 4I79)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I79)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Asn A:141 -Pro A:142
2Thr A:183 -Pro A:184
3Asn B:141 -Pro B:142
4Thr B:183 -Pro B:184

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I79)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I79)

(-) Exons   (0, 0)

(no "Exon" information available for 4I79)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...eeeeeee............eeeeeee....eeeeeee.....eeeeeeee...eeeeee....eeeeee....eeeeee......eeeeeee...........eeeeeee..eeeeee...eeeeee.......eeee......eeeeee....eeeeee...eeeeee.........eeee.......eeeeee......eeeeee....eeeee........eee......eeeeee......eeeeee....eeeee........eeee........eeeeeee..eeeeee...eeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i79 A   4 IYAKFVSQKISKTRWRPLPPGSLQTAETFATGSWDNEENYISLWSIEGDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGCVTVFLHHPNNQTLSVNQQWTTAHYHTSSAPCTGVVCNNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASSWLSRIEITSLLPSRSLSVNTLDVLGPCLVCGTDAEAIYVTRHLFS 380
                                    13        23        33        43     || 65        75        85        95       105       115      |132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292|  ||  344       354       364       374      
                                                                        49|                                                         122|                                                                                                                                                               292|  ||                                         
                                                                         62                                                          130                                                                                                                                                                329  ||                                         
                                                                                                                                                                                                                                                                                                           332|                                         
                                                                                                                                                                                                                                                                                                            339                                         


Chain B from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....eeeeee............eeeeee.....eeeeeeee.....eeeeeeeee...eeeeee....eeeeee....eeeeeee....eeeeeeee..........eeeeeee..eeeeee....eeeee.......eee.......eeeeee....eeeeee...eeeeee.........eeee.......eeeeee......eeeeee....eeeee........eee......eeeeee......eeeeee....eeeee.......eeee........eeeeeee..eeeeee...eeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i79 B   4 IYAKFVSQKISKTRWRPLPPGSLQTAETFATGSWDNEENYISLWSIGDEGDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGCVTVFLHHPNNQTLSVNQQWTTAHYHSSAPCTGVVCNNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASSWLSIEITSLLPSRSLSVNTLDVLGPCLVCGTDAEAIYVTRHLFS 380
                                    13        23        33        43       |63        73        83        93       103       113       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291||  || 344       354       364       374      
                                                                          51|                                                        121|                                                                                                                                                               292|  ||                                        
                                                                           62                                                         130                                                                                                                                                                329  ||                                        
                                                                                                                                                                                                                                                                                                            332|                                        
                                                                                                                                                                                                                                                                                                             340                                        


Chain C from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 4i79 C 330 xxxxxxxxx 338
                            |||||||||
                          330-UNK||||
                           331-UNK|||
                            332-UNK||
                             333-UNK|
                              334-UNK
                               335-UNK
                                336-UNK
                                 337-UNK
                                  338-UNK
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4I79)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I79)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I79)

(-) Gene Ontology  (27, 27)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn A:141 - Pro A:142   [ RasMol ]  
    Asn B:141 - Pro B:142   [ RasMol ]  
    Thr A:183 - Pro A:184   [ RasMol ]  
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  4i79
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  NUP43_HUMAN | Q8NFH3
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 Related Entries

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        NUP43_HUMAN | Q8NFH3: 5a9q

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