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(-)Asym./Biol. Unit
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(-) Description

Title :  A VERTEBRATE CRYPTOCHROME
 
Authors :  W. Xing, L. Busino, T. R. Hinds, S. T. Marionni, N. H. Saifee, M. F. Bush, M N. Zheng
Date :  29 Nov 12  (Deposition) - 13 Mar 13  (Release) - 01 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Cryptochrome Circadian Clock, Photolyase Fold, Circadian Clock, Fad, Nucleus, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Xing, L. Busino, T. R. Hinds, S. T. Marionni, N. H. Saifee, M. F. Bush, M. Pagano, N. Zheng
Scffbxl3 Ubiquitin Ligase Targets Cryptochromes At Their Cofactor Pocket.
Nature V. 496 64 2013
PubMed-ID: 23503662  |  Reference-DOI: 10.1038/NATURE11964

(-) Compounds

Molecule 1 - CRYPTOCHROME-2
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 1-512
    Gene: CRY2, KIAA0658
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4I6E)

(-) Sites  (0, 0)

(no "Site" information available for 4I6E)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I6E)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:428 -His A:429

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I6E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I6E)

(-) Exons   (0, 0)

(no "Exon" information available for 4I6E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:471
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4i6ea1 A:21-223 automated matches                                                                                                                                                                  d4i6ea2 A:224-510 automated matches                                                                                                                                                                                                                                                 SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.........hhhhhh....eeeeeeeehhhhhh....hhhhhhhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhh..eeeee......hhhhhhhhh......hhhhhhhhhhh..................................................hhhhhhhhhhhhh....hhhhhh.....hhhhhhh...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhhhhhhhhhh..............hhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i6e A  21 ASSVHWFRKGLRLHDNPALLAAVARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSQQMESCRAEIQEDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKANANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLS 510
                                    30        40  ||    52        62        72        82   ||   94       104       114       124       134       144       154       164       174       184       194       207       217       227       237       247|      267       277       287       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509 
                                                 43|                                      86|                                                                                                              202|                                      247|                                  295|                                                                                                                                                                                                                    
                                                  46                                       89                                                                                                               206                                       258                                   298
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I6E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I6E)

(-) Gene Ontology  (39, 39)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Phe A:428 - His A:429   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CRY2_MOUSE | Q9R194: 4i6g 4i6j 4mlp 4u8h

(-) Related Entries Specified in the PDB File

4i6g 4i6j