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(-) Description

Title :  BEL BETA-TREFOIL COMPLEX WITH T-ANTIGEN DISACCHARIDE
 
Authors :  M. Bovi, L. Cenci, M. Perduca, S. Capaldi, M. E. Carrizo, L. Civiero, L. R. Chiarelli, M. Galliano, H. L. Monaco
Date :  28 Nov 12  (Deposition) - 24 Apr 13  (Release) - 24 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.72
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A  (1x)
Biol. Unit 4:  B  (1x)
Biol. Unit 5:  C  (1x)
Biol. Unit 6:  D  (1x)
Keywords :  Lectin, Fruiting Bodies, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Bovi, L. Cenci, M. Perduca, S. Capaldi, M. E. Carrizo, L. Civiero, L. R. Chiarelli, M. Galliano, H. L. Monaco
Bel {Beta}-Trefoil: A Novel Lectin With Antineoplastic Properties In King Bolete (Boletus Edulis) Mushrooms.
Glycobiology V. 23 578 2013
PubMed-ID: 23213111  |  Reference-DOI: 10.1093/GLYCOB/CWS164

(-) Compounds

Molecule 1 - BEL BETA-TREFOIL
    Chains: A, B, C, D
    Organism Common: KING BOLETE MUSHROOM
    Organism Scientific: BOLETUS EDULIS
    Organism Taxid: 36056

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD
Biological Unit 3 (1x): A   
Biological Unit 4 (1x):  B  
Biological Unit 5 (1x):   C 
Biological Unit 6 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric Unit (2, 14)
No.NameCountTypeFull Name
1A2G7Ligand/IonN-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2GAL7Ligand/IonBETA-D-GALACTOSE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1A2G4Ligand/IonN-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2GAL4Ligand/IonBETA-D-GALACTOSE
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1A2G3Ligand/IonN-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2GAL3Ligand/IonBETA-D-GALACTOSE
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1A2G1Ligand/IonN-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2GAL1Ligand/IonBETA-D-GALACTOSE
Biological Unit 4 (2, 6)
No.NameCountTypeFull Name
1A2G3Ligand/IonN-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2GAL3Ligand/IonBETA-D-GALACTOSE
Biological Unit 5 (2, 2)
No.NameCountTypeFull Name
1A2G1Ligand/IonN-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2GAL1Ligand/IonBETA-D-GALACTOSE
Biological Unit 6 (2, 4)
No.NameCountTypeFull Name
1A2G2Ligand/IonN-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2GAL2Ligand/IonBETA-D-GALACTOSE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:121 , PHE A:131 , TYR A:136 , ASP A:137 , ASP A:138 , GLN A:139 , HOH A:394 , HOH A:419 , HOH A:429 , HOH A:431 , ARG D:18 , ASN D:102 , ASP D:103 , PRO D:104 , HOH D:329BINDING SITE FOR LINKED RESIDUES A 201 to 202
2AC2SOFTWAREARG A:27 , ASN A:30 , TYR A:37 , TYR A:42 , HOH A:350 , HOH A:366 , HOH A:401 , HOH A:453 , TYR B:25 , ARG B:27 , TRP B:35 , TYR B:37 , TYR B:42 , ASP B:44 , GLN B:45 , HOH B:375 , HOH B:396BINDING SITE FOR LINKED RESIDUES B 201 to 202
3AC3SOFTWAREPHE B:72 , ARG B:74 , TYR B:90 , ASP B:92 , ASN B:93 , HOH B:394BINDING SITE FOR LINKED RESIDUES B 203 to 204
4AC4SOFTWARETYR B:119 , ARG B:121 , ASN B:130 , PHE B:131 , TYR B:136 , ASP B:138 , GLN B:139 , HOH B:336 , HOH B:360 , HOH B:371 , HOH B:385 , HOH B:395 , HOH B:397 , HOH B:418 , HOH B:437 , HOH B:443 , HOH B:454BINDING SITE FOR LINKED RESIDUES B 205 to 206
5AC5SOFTWARETYR C:25 , ARG C:27 , PRO C:32 , TYR C:37 , TYR C:42 , ASP C:44 , GLN C:45 , HOH C:373 , HOH C:376 , HOH C:390 , ARG D:27 , ASN D:30 , TYR D:37 , TYR D:42 , HOH D:306 , HOH D:341 , HOH D:393 , HOH D:401BINDING SITE FOR LINKED RESIDUES C 201 to 202
6AC6SOFTWAREPHE D:72 , ARG D:74 , ILE D:84 , TYR D:90 , ASP D:92 , ASN D:93BINDING SITE FOR LINKED RESIDUES D 201 to 202
7AC7SOFTWARETYR D:119 , ARG D:121 , ASN D:130 , PHE D:131 , TYR D:136 , ASP D:138 , GLN D:139 , HOH D:339 , HOH D:398 , HOH D:423BINDING SITE FOR LINKED RESIDUES D 203 to 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I4X)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Pro A:31 -Pro A:32
2Ser A:78 -Pro A:79
3Asp A:125 -Pro A:126
4Pro B:31 -Pro B:32
5Ser B:78 -Pro B:79
6Asp B:125 -Pro B:126
7Pro C:31 -Pro C:32
8Ser C:78 -Pro C:79
9Asp C:125 -Pro C:126
10Pro D:31 -Pro D:32
11Ser D:78 -Pro D:79
12Asp D:125 -Pro D:126

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I4X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I4X)

(-) Exons   (0, 0)

(no "Exon" information available for 4I4X)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.....eeee.......eeee....hhhh.eeeee.hhhhh..eeeee.....eeee.......eeee.....hhhh.eeeee.......eeeee....eeeee.......eeee....hhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i4x A   1 VNFPNIPAEGVQFRLRARDTGYVIYSRTENPPLVWQYNGPPYDDQLFTLIYGTGPRKNLYAIKSVPNGRVLFSRTSASPYVGNIAGDGTYNDNWFQFIQDDNDPNSFRIYDLASDTVLYSRTTADPKFGNFTGAKYDDQLWHFELV 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140      


Chain B from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.....eeee.......eeee....hhhh.eeeee.hhhhh..eeeee.....eeee.......eeee.....hhhh.eeeee.......eeeee....eeeee.......eeee....hhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i4x B   1 VNFPNIPAEGVQFRLRARDTGYVIYSRTENPPLVWQYNGPPYDDQLFTLIYGTGPRKNLYAIKSVPNGRVLFSRTSASPYVGNIAGDGTYNDNWFQFIQDDNDPNSFRIYDLASDTVLYSRTTADPKFGNFTGAKYDDQLWHFELV 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140      


Chain C from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.....eeee.......eeee....hhhh.eeeee.hhhhh..eeeee.....eeee.......eeee.....hhhh.eeeee.......eeeee....eeeee.......eeee....hhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i4x C   1 VNFPNIPAEGVQFRLRARDTGYVIYSRTENPPLVWQYNGPPYDDQLFTLIYGTGPRKNLYAIKSVPNGRVLFSRTSASPYVGNIAGDGTYNDNWFQFIQDDNDPNSFRIYDLASDTVLYSRTTADPKFGNFTGAKYDDQLWHFELV 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140      


Chain D from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.....eeee.......eeee....hhhh.eeeee.hhhhh..eeeee.....eeee.......eeee.....hhhh.eeeee.......eeeee....eeeee.......eeee....hhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i4x D   1 VNFPNIPAEGVQFRLRARDTGYVIYSRTENPPLVWQYNGPPYDDQLFTLIYGTGPRKNLYAIKSVPNGRVLFSRTSASPYVGNIAGDGTYNDNWFQFIQDDNDPNSFRIYDLASDTVLYSRTTADPKFGNFTGAKYDDQLWHFELV 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4I4X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I4X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I4X)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4I4X)

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 Related Entries

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(-) Related Entries Specified in the PDB File

4i4o 4i4p 4i4q 4i4r 4i4s 4i4u 4i4v 4i4y