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(-) Description

Title :  BEL BETA-TREFOIL COMPLEX WITH LACTOSE
 
Authors :  M. Bovi, L. Cenci, M. Perduca, S. Capaldi, M. E. Carrizo, L. Civiero, L. R. Chiarelli, M. Galliano, H. L. Monaco
Date :  28 Nov 12  (Deposition) - 24 Apr 13  (Release) - 24 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A  (1x)
Biol. Unit 4:  B  (1x)
Biol. Unit 5:  C  (1x)
Biol. Unit 6:  D  (1x)
Keywords :  Lectin, Fruiting Bodies, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Bovi, L. Cenci, M. Perduca, S. Capaldi, M. E. Carrizo, L. Civiero, L. R. Chiarelli, M. Galliano, H. L. Monaco
Bel {Beta}-Trefoil: A Novel Lectin With Antineoplastic Properties In King Bolete (Boletus Edulis) Mushrooms.
Glycobiology V. 23 578 2013
PubMed-ID: 23213111  |  Reference-DOI: 10.1093/GLYCOB/CWS164

(-) Compounds

Molecule 1 - BEL BETA-TREFOIL
    Chains: A, B, C, D
    Organism Common: KING BOLETE MUSHROOM
    Organism Scientific: BOLETUS EDULIS
    Organism Taxid: 36056

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD
Biological Unit 3 (1x): A   
Biological Unit 4 (1x):  B  
Biological Unit 5 (1x):   C 
Biological Unit 6 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric Unit (2, 14)
No.NameCountTypeFull Name
1GOL9Ligand/IonGLYCEROL
2LAT5Ligand/IonBETA-LACTOSE
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2LAT3Ligand/IonBETA-LACTOSE
Biological Unit 2 (2, 7)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL
2LAT2Ligand/IonBETA-LACTOSE
Biological Unit 3 (2, 4)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2LAT1Ligand/IonBETA-LACTOSE
Biological Unit 4 (2, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2LAT2Ligand/IonBETA-LACTOSE
Biological Unit 5 (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2LAT-1Ligand/IonBETA-LACTOSE
Biological Unit 6 (2, 4)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2LAT2Ligand/IonBETA-LACTOSE

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:72 , ARG A:74 , ILE A:84 , TYR A:90 , ASP A:92 , ASN A:93 , HOH A:447 , HOH A:470BINDING SITE FOR RESIDUE LAT A 201
02AC2SOFTWARETYR A:119 , ARG A:121 , TYR A:131 , TYR A:136 , ASP A:138 , GLN A:139 , HOH A:339 , HOH A:387BINDING SITE FOR RESIDUE GOL A 202
03AC3SOFTWARETYR A:25 , ARG A:27 , TYR A:37 , ASP A:44 , GLN A:45BINDING SITE FOR RESIDUE GOL A 203
04AC4SOFTWAREVAL A:1 , HOH A:319 , HOH A:333 , HOH A:362 , HOH A:401 , ARG B:108 , GLY B:133 , LYS B:135BINDING SITE FOR RESIDUE GOL A 204
05AC5SOFTWARETYR B:119 , ARG B:121 , TYR B:131 , ASP B:138 , GLN B:139 , HOH B:301 , HOH B:306 , HOH B:345BINDING SITE FOR RESIDUE LAT B 201
06AC6SOFTWAREPHE B:72 , ARG B:74 , ILE B:84 , TYR B:90 , ASP B:92 , ASN B:93 , HOH B:315BINDING SITE FOR RESIDUE LAT B 202
07AC7SOFTWARETYR B:25 , ARG B:27 , TYR B:37 , ASP B:44 , GLN B:45BINDING SITE FOR RESIDUE GOL B 203
08AC8SOFTWAREPHE C:72 , ILE C:84 , TYR C:90 , ASP C:92 , ASN C:93 , HOH C:363 , HOH C:464BINDING SITE FOR RESIDUE GOL C 201
09AC9SOFTWARETYR C:119 , ARG C:121 , TYR C:131 , TYR C:136 , ASP C:138 , GLN C:139 , HOH C:342 , HOH C:391 , HOH C:411BINDING SITE FOR RESIDUE GOL C 202
10BC1SOFTWARETYR C:25 , ARG C:27 , TYR C:37 , ASP C:44 , GLN C:45BINDING SITE FOR RESIDUE GOL C 203
11BC2SOFTWARETYR D:119 , ARG D:121 , TYR D:131 , TYR D:136 , ASP D:138 , GLN D:139 , HOH D:307 , HOH D:311 , HOH D:339 , HOH D:344 , HOH D:355 , HOH D:375 , HOH D:417 , HOH D:429 , HOH D:439 , HOH D:484BINDING SITE FOR RESIDUE LAT D 201
12BC3SOFTWAREPHE D:72 , ARG D:74 , ILE D:84 , TYR D:90 , ASP D:92 , ASN D:93 , HOH D:449BINDING SITE FOR RESIDUE LAT D 202
13BC4SOFTWAREVAL C:1 , ARG D:108 , LYS D:135 , HOH D:312 , HOH D:318 , HOH D:341 , HOH D:424BINDING SITE FOR RESIDUE GOL D 203
14BC5SOFTWARETYR D:25 , ARG D:27 , TYR D:37 , ASP D:44 , GLN D:45BINDING SITE FOR RESIDUE GOL D 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I4S)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Pro A:31 -Pro A:32
2Ser A:78 -Pro A:79
3Thr A:123 -Pro A:124
4Asp A:125 -Pro A:126
5Pro B:31 -Pro B:32
6Ser B:78 -Pro B:79
7Thr B:123 -Pro B:124
8Asp B:125 -Pro B:126
9Pro C:31 -Pro C:32
10Ser C:78 -Pro C:79
11Thr C:123 -Pro C:124
12Asp C:125 -Pro C:126
13Pro D:31 -Pro D:32
14Ser D:78 -Pro D:79
15Thr D:123 -Pro D:124
16Asp D:125 -Pro D:126

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I4S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I4S)

(-) Exons   (0, 0)

(no "Exon" information available for 4I4S)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.....eeee.......eeee....hhhh.eeeee.hhhhh..eeeee.....eeee.......eeee.....hhhh.eeeee.......eeeee....eeeee.......eeee....hhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i4s A   1 VNFPNIPAEGAQFRLRARDTGYVIYSRTENPPLVWQYNGPPYDDQLFTLIYGTGPHQNLYAIKSVPNGRVLFSRTSASPHVGNIAGDGTYNDNWFQFIQDDNDPNSFRIYSLASDTVLYSRTTPDPQFGNYTGAKYDDQLWHFELV 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140      


Chain B from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.....eeee.......eeee....hhhh.eeeee.hhhhh..eeeee.....eeee.......eeee.....hhhh.eeeee.......eeeee....eeeee.......eeee....hhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i4s B   1 VNFPNIPAEGAQFRLRARDTGYVIYSRTENPPLVWQYNGPPYDDQLFTLIYGTGPHQNLYAIKSVPNGRVLFSRTSASPHVGNIAGDGTYNDNWFQFIQDDNDPNSFRIYSLASDTVLYSRTTPDPQFGNYTGAKYDDQLWHFELV 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140      


Chain C from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.....eeee.......eeee....hhhh.eeeee.hhhhh..eeeee.....eeee.......eeee.....hhhh.eeeee.......eeeee....eeeee.......eeee....hhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i4s C   1 VNFPNIPAEGAQFRLRARDTGYVIYSRTENPPLVWQYNGPPYDDQLFTLIYGTGPHQNLYAIKSVPNGRVLFSRTSASPHVGNIAGDGTYNDNWFQFIQDDNDPNSFRIYSLASDTVLYSRTTPDPQFGNYTGAKYDDQLWHFELV 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140      


Chain D from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.....eeee.......eeee....hhhh.eeeee.hhhhh..eeeee.....eeee.......eeee.....hhhh.eeeee.......eeeee....eeeee.......eeee....hhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i4s D   1 VNFPNIPAEGAQFRLRARDTGYVIYSRTENPPLVWQYNGPPYDDQLFTLIYGTGPHQNLYAIKSVPNGRVLFSRTSASPHVGNIAGDGTYNDNWFQFIQDDNDPNSFRIYSLASDTVLYSRTTPDPQFGNYTGAKYDDQLWHFELV 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4I4S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I4S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I4S)

(-) Gene Ontology  (0, 0)

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    (no "Gene Ontology" information available for 4I4S)

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4i4o 4i4p 4i4q 4i4r 4i4u 4i4v 4i4x 4i4y