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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PROTEIN FRSA COMPLEXED WITH UNKNOWN LIGAND
 
Authors :  A. A. Fedorov, E. V. Fedorov, B. Desai, J. A. Gerlt, N. Richards, S. C. Alm
Date :  27 Nov 12  (Deposition) - 09 Oct 13  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Two-Domain Protein Frsa, Unknown Function, Unknown Ligand (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. F. Kellett, E. Brunk, B. J. Desai, A. A. Fedorov, S. C. Almo, J. A. Gerlt, U. Rothlisberger, N. G. Richards
Computational, Structural, And Kinetic Evidence That Vibrio Vulnificus Frsa Is Not A Cofactor-Independent Pyruvate Decarboxylase.
Biochemistry V. 52 1842 2013
PubMed-ID: 23452154  |  Reference-DOI: 10.1021/BI400093Y

(-) Compounds

Molecule 1 - UPF0255 PROTEIN FRSA
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FRSA
    Organism Scientific: VIBRIO VULNIFICUS
    Organism Taxid: 672

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
11PG2Ligand/Ion2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL
26NA2Ligand/IonHEXANOIC ACID
3GOL1Ligand/IonGLYCEROL
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
11PG1Ligand/Ion2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL
26NA1Ligand/IonHEXANOIC ACID
3GOL-1Ligand/IonGLYCEROL
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
11PG1Ligand/Ion2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL
26NA1Ligand/IonHEXANOIC ACID
3GOL1Ligand/IonGLYCEROL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:56 , TRP A:59 , GLN A:60 , MET A:209 , LEU A:295 , TYR A:398 , LEU A:402BINDING SITE FOR RESIDUE 1PG A 501
2AC2SOFTWAREGLY A:201 , LEU A:202 , ARG A:272 , PHE A:273 , HOH A:652 , HOH A:703BINDING SITE FOR RESIDUE 6NA A 502
3AC3SOFTWARETRP B:59 , GLN B:60 , LEU B:212 , ARG B:272 , LEU B:295 , TYR B:398 , LEU B:402 , HOH B:626BINDING SITE FOR RESIDUE 1PG B 501
4AC4SOFTWARELYS B:308 , MET B:312BINDING SITE FOR RESIDUE GOL B 502
5AC5SOFTWAREGLY B:201 , LEU B:202 , ARG B:272 , PHE B:273 , LEU B:320 , HOH B:664BINDING SITE FOR RESIDUE 6NA B 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I4C)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Tyr A:137 -Pro A:138
2Tyr B:137 -Pro B:138

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I4C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I4C)

(-) Exons   (0, 0)

(no "Exon" information available for 4I4C)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:402
                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhh...hhhhh.eehhhhhhhhhhhhhhhh.......hhhhhhhhh.hhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh..eeeeeeeee..eeeeeeeee......eeeeeee.....hhhhhhhhhhhhhhhhh.eeee.....hhhhh........hhhhhhhhhhhhhh..eeeeeeeeeeehhhhhhhhhhhhhh.....eeeee.........hhhhhh..hhhhhhhhhhhh...eehhhhhhhhhhhhh...............eeeeee......hhhhhhhhhhh....eeeee...hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4i4c A  14 FVKHKQAKETSALTQYMPTSQSLLDEIKEKNGFSWYRNLRRLQWVWQGVDPIEQEQVLARIASSKHSRTDEQWLDTVMGYHSGNWAYEWTRLGMEHQKRAGEMTNEAASEALFSASLCYSIAGYPHLKSDNLAIQAQVLANSAYLEAAKKSKYIIKQLEIPFEKGKITAHLHLTNTDKPHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYPLTEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAFFSTYGKAKKISSKTITQGYEQSLDLAIKWLEDELLR 415
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413  


Chain B from PDB  Type:PROTEIN  Length:398
                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh...hhhhhhhhhhhhhhhh.......hhhhhhhhh.hhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh..eeeeeeeee..eeeeeeeee......eeeeeee.....hhhhhhhhhhhhhhhhh.eeeee....hhhhh........hhhhhhhhh.......eeeeeeeeeeehhhhhhhhhhhhhh...eeeeeee.........hhhhhh..hhhhhhhhhhhh.....hhhhhhhhhhhhh...............eeeeee......hhhhhhhhhhh....eeeee...hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i4c B  18 KQAKETSALTQYMPTSQSLLDEIKEKNGFSWYRNLRRLQWVWQGVDPIEQEQVLARIASSKHSRTDEQWLDTVMGYHSGNWAYEWTRLGMEHQKRAGEMTNEAASEALFSASLCYSIAGYPHLKSDNLAIQAQVLANSAYLEAAKKSKYIIKQLEIPFEKGKITAHLHLTNTDKPHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYPLTEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAFFSTYGKAKKISSKTITQGYEQSLDLAIKWLEDELLR 415
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4I4C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I4C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I4C)

(-) Gene Ontology  (0, 0)

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    (no "Gene Ontology" information available for 4I4C)

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 Related Entries

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(-) Related Entries Specified in the PDB File

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