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(-) Description

Title :  STRUCTURE OF NGNAGS BOUND WITH BISUBSTRATE ANALOG COA-NAG
 
Authors :  D. Shi, G. Zhao, N. M. Allewell, M. Tuchman
Date :  27 Nov 12  (Deposition) - 09 Jan 13  (Release) - 06 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.75
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (6x)
Keywords :  Protein-Bisubstrate Analog Complex, Synthase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Zhao, N. M. Allewell, M. Tuchman, D. Shi
Structure Of The Complex Of Neisseria Gonorrhoeae N-Acetyl-L-Glutamate Synthase With A Bound Bisubstrate Analog.
Biochem. Biophys. Res. Commun. V. 430 1253 2013
PubMed-ID: 23261468  |  Reference-DOI: 10.1016/J.BBRC.2012.12.064

(-) Compounds

Molecule 1 - AMINO-ACID ACETYLTRANSFERASE
    Chains: A
    EC Number: 2.3.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ARGA, NGLG_00316
    Organism Scientific: NEISSERIA GONORRHOEAE SK-93-1035
    Organism Taxid: 528360
    Strain: ATCC53420
    Synonym: N-ACETYLGLUTAMATE SYNTHASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (6x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
11C41Ligand/Ion(2S)-2-({(3S,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]-3,5,9-TRIHYDROXY-8,8-DIMETHYL-3,5-DIOXIDO-10,14,20-TRIOXO-2,4,6-TRIOXA-18-THIA-11,15-DIAZA-3LAMBDA~5~,5LAMBDA~5~-DIPHOSPHAICOSAN-20-YL}AMINO)PENTANEDIOICACID (NON-PREFERRED NAME)
2SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
11C46Ligand/Ion(2S)-2-({(3S,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]-3,5,9-TRIHYDROXY-8,8-DIMETHYL-3,5-DIOXIDO-10,14,20-TRIOXO-2,4,6-TRIOXA-18-THIA-11,15-DIAZA-3LAMBDA~5~,5LAMBDA~5~-DIPHOSPHAICOSAN-20-YL}AMINO)PENTANEDIOICACID (NON-PREFERRED NAME)
2SO46Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:134 , ARG A:151 , LYS A:152 , TYR A:177 , ILE A:312 , LEU A:313 , LEU A:314 , ARG A:316 , ALA A:355 , CYS A:356 , LEU A:357 , ALA A:358 , VAL A:359 , GLN A:364 , ASP A:365 , GLY A:367 , TYR A:368 , GLY A:369 , GLU A:370 , LEU A:391 , SER A:392 , ASN A:394 , THR A:395 , TRP A:398 , PHE A:399 , ARG A:402 , ARG A:416 , ARG A:425 , SER A:427 , HOH A:602BINDING SITE FOR RESIDUE 1C4 A 501
2AC2SOFTWAREARG A:12 , LEU A:43 , ASP A:46 , GLY A:261 , GLY A:265 , SER A:266 , LEU A:267BINDING SITE FOR RESIDUE SO4 A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I49)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4I49)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I49)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I49)

(-) Exons   (0, 0)

(no "Exon" information available for 4I49)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh.....ee..ee..hhhhhhhhhhhhhhhhhhhhhhhhh....ee....eeeee..ee..ee...eeeeeeehhhhhhhhhhh..eeee..eee.....eeeehhhhhhhhhhhhh...eeeeee..............eeehhhhhhhh...hhhhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhh.....eeee.....eeee.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh.eeeeee..eeeeeeeeee.....eeeeeeeee.......hhhhhhhhhhhhhhhhh...eeeeee..hhhhhhh...eeehhhhhhhhhhhhhhhhh...eeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i49 A   5 DSFVAHFREAAPYIRQMRGTTLVAGIDGRLLEGGTLNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQGRTPHYCRGLRVTDETSLGQAQQFAGTVRSRFEAALCGSSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGNIVWMPPLGHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRPDGTLAETLSAQEAQSLAEHAASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAFVSIRQAHSGDIPHIAALIRPLEEQGILLHRSREYLENHISEFSILEHDGNLYGCAALKTFAEADCGEIACLAVSPQAQDGGYGERLLAHIIDKARGIGISRLFALSTNTGEWFAERGFQTASEDELPETRRKDYRSNGRNSHILVRRLHR 436
                                    14        24        34        44        54        64        74        84        94       104       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432    
                                                                                                                                      113|                                                                                                                                                                                                                                                                                                                          
                                                                                                                                       122
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4I49)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I49)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I49)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4I49)

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  4i49
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  2.3.1.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

2r2v SAME PROTEIN BOUND WITH ACCOA
3b8g SAME PROTEIN BOUND WITH COA AND NAG
3d2m SAME PROTEIN BOUND WITH COA AND GLU
3d2p SAME PROTEIN BOUND WITH COA AND ARG