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(-) Description

Title :  CRYSTAL STRUCTURE OF SERINE HYDROLASE CCSP0084 FROM THE POLYAROMATIC HYDROCARBON (PAH)-DEGRADING BACTERIUM CYCLOCLASTICUS ZANKLES
 
Authors :  P. J. Stogios, X. Xu, A. Dong, H. Cui, M. Alcaide, J. Tornes, C. Gertler, M. M. Yakimov, P. N. Golyshin, M. Ferrer, A. Savchenko
Date :  26 Nov 12  (Deposition) - 26 Jun 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.69
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha And Beta Proteins, Alpha/Beta Hydrolase Fold, Alpha/Beta- Hydrolases Superfamily, Carbon-Carbon Bond Hydrolase Family, Serine Hydrolase, Esterase, Meta-Cleavage Product (Mcp) Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Alcaide, J. Tornes, P. J. Stogios, X. Xu, C. Gertler, R. Di Leo, R. Bargiela, A. Lafraya, M. E. Guazzaroni, N. Lopez-Cortes, T. N. Chernikova, O. V. Golyshina, T. Y. Nechitaylo, I. Plumeier, D. H. Pieper, M. M. Yakimov, A. Savchenko, P. N. Golyshin, M. Ferrer
Single Residues Dictate The Co-Evolution Of Dual Esterases: Mcp Hydrolases From The Alpha / Beta Hydrolase Family.
Biochem. J. V. 454 157 2013
PubMed-ID: 23750508  |  Reference-DOI: 10.1042/BJ20130552

(-) Compounds

Molecule 1 - SERINE HYDROLASE CCSP0084
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TV LIC
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: Q91_2195
    Organism Common: CYCLOCLASTICUS ZANCLES
    Organism Scientific: CYCLOCLASTICUS SP. P1
    Organism Taxid: 385025

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2NA1Ligand/IonSODIUM ION
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:31 , GLY A:33 , ASN A:41 , TRP A:259 , HOH A:680 , HOH A:682 , HOH A:739BINDING SITE FOR RESIDUE CL A 301
2AC2SOFTWARESER A:32 , SER A:104BINDING SITE FOR RESIDUE CL A 302
3AC3SOFTWAREHIS A:117 , GLU A:119 , HOH A:494 , HOH A:762BINDING SITE FOR RESIDUE NA A 303
4AC4SOFTWARESER A:10 , THR A:20 , HOH A:470 , HOH A:633BINDING SITE FOR RESIDUE PEG A 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I3F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4I3F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:283
                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4i3fa_ A: automated matches                                                                                                                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..eeeeeeee......eeeee.......hhhhhhhhhhhhhh...eeeee...............hhhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee.........hhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhh....eeeeee.......hhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i3f A   0 GMQTSNIQTGSFNTFLNEAGTDKDTSILLLHGSGPGANAMSNWQYALPFLAENYHCLAPDIAGFGLSQHNCPPNGTSHWIDIWVQQQIDLLDAKGIEQTHIVGNSMGGGVTLHLLNRHPERFKKAVLMGPVGAPFAPTEGLTKGWEFYKDPSKEALEYLITKFLFDPSLLGNDIASIAAQRFDNVMKDEVRLQFEAMFSGGTKKGIDAFVLSDDELNNISHQMLVTHAREDFFIPLNNAYYLIDRIPNAQLHVFDHCGHWVQIEKKKAFNNLTKLFFDGMFDD 282
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I3F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I3F)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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