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(-) Description

Title :  CRYSTAL STRUCTURE OF BETA-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE (FABG) FROM VIBRIO CHOLERAE IN COMPLEX WITH NADPH
 
Authors :  J. Hou, M. Chruszcz, H. Zheng, T. Osinski, W. F. Anderson, W. Minor, Cent Structural Genomics Of Infectious Diseases (Csgid)
Date :  16 Nov 12  (Deposition) - 12 Dec 12  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.06
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Vibrio Cholerae, Fabg, Rossmann Fold, Beta- Ketoacyl-Acyl Carrier Protein Reductase, Short Chain Dehydrogenase, Nadp(H), Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Hou, H. Zheng, M. Chruszcz, M. D. Zimmerman, I. A. Shumilin, T. Osinski, M. Demas, S. Grimshaw, W. Minor
Dissecting The Structural Elements For The Activation Of Beta-Ketoacyl-(Acyl Carrier Protein) Reductase From Vibrio Cholerae.
J. Bacteriol. V. 198 463 2015
PubMed-ID: 26553852  |  Reference-DOI: 10.1128/JB.00360-15

(-) Compounds

Molecule 1 - 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE FABG
    Chains: A, B
    EC Number: 1.1.1.100
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-CODONPLUS(DE3)-RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FABG, VC2021, VC_2021
    Organism Scientific: VIBRIO CHOLERAE O1
    Organism Taxid: 243277
    Strain: ATCC 39315 / EL TOR INABA N16961
    Synonym: 3-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE, BETA-KETOACYL- ACYL CARRIER PROTEIN REDUCTASE, BETA-KETOACYL-ACP REDUCTASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric Unit (3, 14)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3SO410Ligand/IonSULFATE ION
Biological Unit 1 (3, 28)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2NDP4Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3SO420Ligand/IonSULFATE ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:2 , ARG A:32 , SER B:2 , PHE B:4 , ARG B:32BINDING SITE FOR RESIDUE SO4 A 301
02AC2SOFTWAREARG A:133BINDING SITE FOR RESIDUE SO4 A 302
03AC3SOFTWAREASP A:96 , ASN A:97 , GLY A:151 , HOH A:448BINDING SITE FOR RESIDUE SO4 A 303
04AC4SOFTWAREARG A:101BINDING SITE FOR RESIDUE SO4 A 304
05AC5SOFTWAREGLY A:92 , ILE A:93 , THR A:94 , NDP A:306BINDING SITE FOR RESIDUE EDO A 305
06AC6SOFTWAREGLY A:16 , SER A:18 , ARG A:19 , ILE A:21 , THR A:41 , LEU A:62 , ASN A:63 , VAL A:64 , ASN A:90 , ALA A:91 , GLY A:92 , VAL A:140 , GLY A:141 , SER A:142 , TYR A:155 , LYS A:159 , PRO A:185 , GLY A:186 , ILE A:188 , THR A:190 , EDO A:305 , HOH A:402 , HOH A:442 , HOH A:461BINDING SITE FOR RESIDUE NDP A 306
07AC7SOFTWAREARG B:133 , ARG B:176BINDING SITE FOR RESIDUE SO4 B 301
08AC8SOFTWAREILE B:93 , ARG B:95 , HOH B:445BINDING SITE FOR RESIDUE SO4 B 302
09AC9SOFTWAREGLY B:82 , GLY B:83 , LYS B:132 , EDO B:307BINDING SITE FOR RESIDUE SO4 B 303
10BC1SOFTWAREARG B:19 , GLY B:20 , LYS B:23 , HOH B:456BINDING SITE FOR RESIDUE SO4 B 304
11BC2SOFTWAREALA B:150 , ARG B:171 , GLU B:172 , ARG B:176 , HOH B:446BINDING SITE FOR RESIDUE SO4 B 305
12BC3SOFTWARELYS B:103 , GLU B:104 , HOH B:409 , HOH B:452BINDING SITE FOR RESIDUE SO4 B 306
13BC4SOFTWAREGLY B:83 , VAL B:84 , VAL B:125 , GLY B:128 , MET B:129 , LYS B:132 , SO4 B:303BINDING SITE FOR RESIDUE EDO B 307
14BC5SOFTWAREGLY B:16 , ALA B:17 , SER B:18 , ARG B:19 , ILE B:21 , THR B:41 , LEU B:62 , ASN B:63 , VAL B:64 , ASN B:90 , ALA B:91 , VAL B:140 , GLY B:141 , TYR B:155 , LYS B:159 , PRO B:185 , GLY B:186 , ILE B:188 , THR B:190BINDING SITE FOR RESIDUE NDP B 308

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I08)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4I08)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I08)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I08)

(-) Exons   (0, 0)

(no "Exon" information available for 4I08)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains d4i08a_ A: automated matches                                                                                                                                                                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee........hhhhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i08 A   2 SQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMNDEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGMYMI 248
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191||     205       215       225       235       245   
                                                                                                                                                                                                                        192|                                                   
                                                                                                                                                                                                                         197                                                   


Chain B from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                     
               SCOP domains d4i08b_ B: automated matches                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i08 B   2 SQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETTKALNDEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGMYMI 248
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       193       203       213       223       233       243     
                                                                                                                                                                                                                      190|                                                       
                                                                                                                                                                                                                       193
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I08)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I08)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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        FABG_VIBCH | Q9KQH7: 3rro 3rsh 3u09 4wjz 5end

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