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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF A BACTERIAL ENERGY-COUPLING FACTOR TRANSPORTER
 
Authors :  T. L. Wang, G. B. Fu, X. J. Pan, Y. G. Shi
Date :  15 Nov 12  (Deposition) - 17 Apr 13  (Release) - 22 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.53
Chains :  Asym./Biol. Unit :  A,B,S,T
Keywords :  Membrane Protein, Ecf, Transporter, Hydrolase, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Wang, G. Fu, X. Pan, J. Wu, X. Gong, J. Wang, Y. Shi
Structure Of A Bacterial Energy-Coupling Factor Transporter
Nature V. 497 272 2013
PubMed-ID: 23584587  |  Reference-DOI: 10.1038/NATURE12045

(-) Compounds

Molecule 1 - ENERGY-COUPLING FACTOR TRANSPORTER ATP-BINDING PROTEIN ECFA 1
    Chains: B
    EC Number: 3.6.3.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ECFA1, CBIO1, LVIS_1661
    Organism Scientific: LACTOBACILLUS BREVIS
    Organism Taxid: 1580
    Synonym: ECF TRANSPORTER A COMPONENT ECFA 1
 
Molecule 2 - ENERGY-COUPLING FACTOR TRANSPORTER ATP-BINDING PROTEIN ECFA 2
    Chains: A
    EC Number: 3.6.3.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ECFA2, CBIO2, LVIS_1662
    Organism Scientific: LACTOBACILLUS BREVIS
    Organism Taxid: 1580
    Synonym: ECF TRANSPORTER A COMPONENT ECFA 2
 
Molecule 3 - ENERGY-COUPLING FACTOR TRANSPORTER TRANSMEMBRANE PROTEIN ECFT
    Chains: T
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ECFT, LVIS_1660
    Organism Scientific: LACTOBACILLUS BREVIS
    Organism Taxid: 1580
    Synonym: ECF TRANSPORTER T COMPONENT ECFT
 
Molecule 4 - PREDICTED MEMBRANE PROTEIN
    Chains: S
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: LVIS_2151
    Organism Scientific: LACTOBACILLUS BREVIS
    Organism Taxid: 1580

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABST

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4HZU)

(-) Sites  (0, 0)

(no "Site" information available for 4HZU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HZU)

(-) Cis Peptide Bonds  (22, 22)

Asymmetric/Biological Unit
No.Residues
1Tyr B:12 -Gln B:13
2Pro B:17 -Met B:18
3Gly B:115 -Met B:116
4Gly B:196 -Leu B:197
5Arg B:260 -Gly B:261
6Gly A:67 -Gly A:68
7Leu A:71 -Thr A:72
8Ile A:112 -Ser A:113
9Leu A:141 -Ser A:142
10Asp T:20 -Pro T:21
11Asn T:40 -Ile T:41
12Ile T:60 -Ser T:61
13Pro T:88 -Ala T:89
14Gly T:192 -Gly T:193
15His T:233 -Arg T:234
16Lys S:3 -Gly S:4
17Ala S:32 -Thr S:33
18Tyr S:51 -Gly S:52
19Gly S:52 -Arg S:53
20Thr S:71 -Gly S:72
21Pro S:96 -Arg S:97
22Phe S:128 -Gly S:129

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HZU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HZU)

(-) Exons   (0, 0)

(no "Exon" information available for 4HZU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee........ee...eee....eeeeee.....hhhhhhhhhh.....eeeeee........hhhhhhhheeeee..........hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhh.eeeeee..eeeeeehhhhhhhhhhhhh......hhhhhhhhhhhh..........hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hzu A   2 TENIISVDHLTYQYQAPALTDVSFTVHAGEWLAIVGHNGSGKSTLAKSLDGLLPFTQGSVTVGGITLTPETVWQVREQIGMIFQNPDNQFVGATVEDDVAFGLENRQISRDEMVPRVQAALAQVGMTSFAQREPSSLSGGQKQRVALAGIVAIAPKILILDEATSMLDPQGRIEMLAIVRQLRQQQNLTVISITHDIDEAASADRVLVIDDGRLVDEAVPSQIFERGTQLVEMGLDLPFTEKLKAALRQRGITPPTTYQTAAEMEEWLWQSLS 277
                                    11   ||   24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274   
                                        15|                                                                                                                                                                                                                                                                  
                                         19                                                                                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:284
                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee.......eeeeeeeeeee.....eeee.....hhhhhhhh........eeeeee..eee........hhhhhhheeee..hhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhh..eeeee....eeeeehhhhhh.hhhhhhhh....hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hzu B   2 AIAFEHVTYTYQAGTPMAHTALTDVSLTVPDRGYLAIIGHTGSGKSTLIQQLNALLKPTSGTIKIDEFTITPETTNAALKPLRQHVGMVFQFPENQLFEETVRQDIAFGPKNFGMADADALALADEMLTTVGLDQSYAERSPFELSGGQMRRVAIAGVLAMQPKVLVLDEPTAGLDPQGRQEMMRLFARLHQEQGLTIVLVTHQMEDVAQYAEQVAVMHEGRLMKFGTPADVFSNREWLQDHQLDVPQAAQFARRLRDRGLTFPKQPLTADQLADYLAQQWAQR 285
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281    


Chain S from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hzu S   1 MTKGSLKENTIAAVLIAMTVALSILVVIPIPATKGIVTLCEVGIYTSAILYGRRMGLLVGGASGFLIDILTGYPVWCLFSLVIHGTQGLVVGWLLPRHHKGIRSMLLPLLVGSLVMVIGYCLATTLLFGWPAGLASIFGNVVQVGFGAGVTLSIVGPLTRLKPD 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    


Chain T from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh...hhhhhhhhh.hhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hzu T  17 HRLDPRAKLMLSFCYIIVVFLANNIWSYAILIAFTVGAILSSKISLGFFLKGIRPLLWLIVFTVVLQLLFSPAGGHTYFHWATQDGLINAGYIFVRFLLIIMMSTLLTLSTQPLDIATGLASLMKPLRWVKVPVDTLAMMLSIALRFVPTLMDEATKIMNAQRARGVDFGEGGLFKQAKSLIPLMVPLFMSAFNRAEDLSTAMEARGYQDSEHRSQYRRDTVTWLLFLLGFVAILIFRHW 266
                                    26        36        46        56        66        76        86        96 ||    110       120       130       140       150       160       170       180       190       200       210       220       230      |246       256       266
                                                                                                            98|                                                                                                                                   237|                      
                                                                                                            103                                                                                                                                    244
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HZU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HZU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HZU)

(-) Gene Ontology  (10, 23)

Asymmetric/Biological Unit(hide GO term definitions)

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Asymmetric/Biological Unit
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  Cis Peptide Bonds
    Ala S:32 - Thr S:33   [ RasMol ]  
    Arg B:260 - Gly B:261   [ RasMol ]  
    Asn T:40 - Ile T:41   [ RasMol ]  
    Asp T:20 - Pro T:21   [ RasMol ]  
    Gly A:67 - Gly A:68   [ RasMol ]  
    Gly B:115 - Met B:116   [ RasMol ]  
    Gly B:196 - Leu B:197   [ RasMol ]  
    Gly S:52 - Arg S:53   [ RasMol ]  
    Gly T:192 - Gly T:193   [ RasMol ]  
    His T:233 - Arg T:234   [ RasMol ]  
    Ile A:112 - Ser A:113   [ RasMol ]  
    Ile T:60 - Ser T:61   [ RasMol ]  
    Leu A:141 - Ser A:142   [ RasMol ]  
    Leu A:71 - Thr A:72   [ RasMol ]  
    Lys S:3 - Gly S:4   [ RasMol ]  
    Phe S:128 - Gly S:129   [ RasMol ]  
    Pro B:17 - Met B:18   [ RasMol ]  
    Pro S:96 - Arg S:97   [ RasMol ]  
    Pro T:88 - Ala T:89   [ RasMol ]  
    Thr S:71 - Gly S:72   [ RasMol ]  
    Tyr B:12 - Gln B:13   [ RasMol ]  
    Tyr S:51 - Gly S:52   [ RasMol ]  
 

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  4hzu
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  ECFT_LACBA | Q03PY7
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  Q03NM0_LACBA | Q03NM0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ECFA1_LACBA | Q03PY5: 4huq 4rfs
        ECFA2_LACBA | Q03PY6: 4huq 4rfs
        ECFT_LACBA | Q03PY7: 4huq 4rfs

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4HZU)