4HW6 - JenaLib

Title :   CRYSTAL STRUCTURE OF AN AUXILIARY NUTRIENT BINDING PROTEIN (BACOVA_00264) FROM BACTEROIDES OVATUS ATCC 8483 AT 1.70 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   07 Nov 12 (Deposition) - 12 Dec 12 (Release) - 24 Dec 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Putative Carbohydrate Bindning Two Domains Protein, Ipt/Tig Domain (Pf01833), 6-Beta-Propeller, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Protein (Bacova_00264) From Bacteroides Ovatus Atcc 8483 At 1. 70 A Resolution
To Be Published
PubMed: search

Compounds

Molecule 1 - HYPOTHETICAL PROTEIN, IPT/TIG DOMAIN PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	SPEEDET
	Expression System Strain	:	PB1
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	ZP_02063319.1
	Organism Scientific	:	BACTEROIDES OVATUS
	Organism Taxid	:	411476
	Strain	:	ATCC 8483

Structural Features

Chains, Units

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (4, 69)

Asymmetric Unit (4, 69)

No.	Name	Count	Type	Full Name
1	CL	10	Ligand/Ion	CHLORIDE ION
2	EDO	15	Ligand/Ion	1,2-ETHANEDIOL
3	IOD	12	Ligand/Ion	IODIDE ION
4	MSE	32	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (3, 11)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
3	IOD	1	Ligand/Ion	IODIDE ION
4	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (3, 20)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EDO	7	Ligand/Ion	1,2-ETHANEDIOL
3	IOD	5	Ligand/Ion	IODIDE ION
4	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (3, 14)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
3	IOD	4	Ligand/Ion	IODIDE ION
4	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 4 (3, 14)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
3	IOD	2	Ligand/Ion	IODIDE ION
4	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Sites (35, 35)

Asymmetric Unit (35, 35)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:313 , THR A:315 , ASP A:317 , TRP A:318 , GLU A:384 , ASP A:385	BINDING SITE FOR RESIDUE EDO A 502
02	AC2	SOFTWARE	PRO A:354 , TRP A:367	BINDING SITE FOR RESIDUE EDO A 503
03	AC3	SOFTWARE	TYR A:345 , ILE A:346 , HOH A:810 , HOH A:866 , GLY B:363	BINDING SITE FOR RESIDUE CL A 504
04	AC4	SOFTWARE	HIS A:313 , GLU A:384 , GLU A:386 , HOH A:1043	BINDING SITE FOR RESIDUE CL A 505
05	AC5	SOFTWARE	ASP A:171 , ARG A:197 , HOH A:741 , HOH A:775	BINDING SITE FOR RESIDUE CL A 506
06	AC6	SOFTWARE	ASN A:220 , TRP A:312 , HOH A:742 , HOH A:912	BINDING SITE FOR RESIDUE CL A 507
07	AC7	SOFTWARE	ARG B:260	BINDING SITE FOR RESIDUE IOD B 501
08	AC8	SOFTWARE	ARG B:193 , HOH B:753	BINDING SITE FOR RESIDUE IOD B 502
09	AC9	SOFTWARE	ASP B:171 , ARG B:197 , HOH B:1102	BINDING SITE FOR RESIDUE IOD B 504
10	BC1	SOFTWARE	ASN B:220 , TRP B:312 , HOH B:787	BINDING SITE FOR RESIDUE IOD B 505
11	BC2	SOFTWARE	ASP B:317 , TRP B:318 , GLU B:384 , ASP B:385 , HOH B:771 , HOH B:1085	BINDING SITE FOR RESIDUE EDO B 506
12	BC3	SOFTWARE	HOH B:1150	BINDING SITE FOR RESIDUE EDO B 507
13	BC4	SOFTWARE	THR B:210 , THR B:211 , ASN B:212 , THR B:251 , HOH B:1136	BINDING SITE FOR RESIDUE EDO B 508
14	BC5	SOFTWARE	THR B:155 , LYS B:156 , TRP B:157 , HOH B:939 , HOH B:1081	BINDING SITE FOR RESIDUE EDO B 509
15	BC6	SOFTWARE	PRO B:354 , TRP B:367 , HOH B:1031	BINDING SITE FOR RESIDUE EDO B 510
16	BC7	SOFTWARE	ASN B:212 , TYR B:242 , ARG B:253 , HOH B:720 , HOH B:891	BINDING SITE FOR RESIDUE EDO B 511
17	BC8	SOFTWARE	GLY B:325 , HIS B:327 , SER B:352 , HOH B:783 , HOH B:1096	BINDING SITE FOR RESIDUE EDO B 512
18	BC9	SOFTWARE	ILE B:346 , HOH B:726 , HOH B:961	BINDING SITE FOR RESIDUE CL B 513
19	CC1	SOFTWARE	GLY A:421 , TYR A:422 , HOH A:612 , GLU B:152 , ASN B:153	BINDING SITE FOR RESIDUE CL B 514
20	CC2	SOFTWARE	LYS B:149 , LEU B:150 , ARG B:457 , HOH B:647 , HOH B:879	BINDING SITE FOR RESIDUE CL B 515
21	CC3	SOFTWARE	ARG C:260 , HIS C:280	BINDING SITE FOR RESIDUE IOD C 501
22	CC4	SOFTWARE	GLU C:152 , TYR D:422	BINDING SITE FOR RESIDUE IOD C 502
23	CC5	SOFTWARE	GLY C:421 , TYR C:422 , GLU D:152 , ASN D:153	BINDING SITE FOR RESIDUE IOD C 503
24	CC6	SOFTWARE	PHE C:170 , ASP C:171 , ARG C:197 , HOH C:673	BINDING SITE FOR RESIDUE IOD C 504
25	CC7	SOFTWARE	THR C:211 , ASN C:212 , ARG C:253 , HOH C:920	BINDING SITE FOR RESIDUE EDO C 505
26	CC8	SOFTWARE	THR C:315 , ASP C:317 , TRP C:318 , GLU C:384 , ASP C:385	BINDING SITE FOR RESIDUE EDO C 506
27	CC9	SOFTWARE	TYR C:345 , ILE C:346 , GLY D:363 , HOH D:951	BINDING SITE FOR RESIDUE CL C 507
28	DC1	SOFTWARE	ARG D:260 , HOH D:1006	BINDING SITE FOR RESIDUE IOD D 501
29	DC2	SOFTWARE	ASN D:220 , TRP D:312 , HOH D:702 , HOH D:1012	BINDING SITE FOR RESIDUE IOD D 502
30	DC3	SOFTWARE	ASN D:224 , PRO D:289 , HOH D:625 , HOH D:719	BINDING SITE FOR RESIDUE EDO D 503
31	DC4	SOFTWARE	THR D:315 , ASP D:317 , TRP D:318 , GLU D:384 , ASP D:385	BINDING SITE FOR RESIDUE EDO D 504
32	DC5	SOFTWARE	TYR B:205 , HOH B:802 , THR D:210 , THR D:211 , ASN D:212 , ARG D:253 , HOH D:765	BINDING SITE FOR RESIDUE EDO D 505
33	DC6	SOFTWARE	LYS C:444 , HOH C:699 , LYS D:92 , ILE D:104 , HOH D:939	BINDING SITE FOR RESIDUE EDO D 506
34	DC7	SOFTWARE	TYR D:345 , ILE D:346	BINDING SITE FOR RESIDUE CL D 507
35	DC8	SOFTWARE	PHE D:170 , ASP D:171 , ARG D:197 , HOH D:650	BINDING SITE FOR RESIDUE CL D 508

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeee..ee....eeeeeee....hhh.eeeee..eeeeeeee...eeeee.........eeeeee.....eeeeee.....ee...eeeeeee..............ee...........eeee.......eeeee.....eeeee....eeeee......eeeeee.....eeeee.......eeeeee.hhhh...eeeeee.......ee......eee......eeeee......eeeeeee.......eeeee.....eeeeee....eeeeee...........eeeee.........ee.hhh....eeeeeeee.hhhh.....eeeeeee....eeeee....eeeeee............ee.............eee....eeeeeehhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hw6 A  42 SGTPFNPKEEIVVEKFLPTEGRKGTRVVVYGRNFGNDVSKVKVTIGGYPAKVINVKGESLLCICPSKAYEGDVKVSVVGDDEAELKSGVCEAKFDYQYNYVVTTFLGKLYENNTKWDVLAGPFDDCGAFDNIWRmmFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDmVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAmISSYDPATGTLTEEEVmmDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGmGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDmKRKCFYIGDCDNHRVRKIAPEE 465
                                    51        61        71        81        91       101       111       121       131       141       151       161       171    || 181       191       201       211       221     | 231       241       251       261       271       281 |     291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441 |     451       461    
                                                                                                                                                                176-MSE                                            227-MSE                                                 283-MSE          300-MSE                                                     360-MSE                                                                            443-MSE                  
                                                                                                                                                                 177-MSE                                                                                                                     301-MSE

Chain B from PDB  Type:PROTEIN  Length:422
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeee..ee....eeeeeee....hhh.eeeee..eeeeeeee...eeeee.........eeeeee.....eeeeee.....ee...eeeeeee..............ee...........eeee.......eeeee.....eeeee....eeeee......eeeeee.....eeeee.......eeeeee.hhhh...eeeeee.......ee......eee......eeeee......eeeeeee.......eeeee.....eeeeee....eeeeee...........eeeee.........ee.hhh....eeeeeeee.hhhh.....eeeeeee....eeeee....eeeeeee...........ee.............eee....eeeeeehhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hw6 B  44 TPFNPKEEIVVEKFLPTEGRKGTRVVVYGRNFGNDVSKVKVTIGGYPAKVINVKGESLLCICPSKAYEGDVKVSVVGDDEAELKSGVCEAKFDYQYNYVVTTFLGKLYENNTKWDVLAGPFDDCGAFDNIWRmmFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDmVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAmISSYDPATGTLTEEEVmmDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGmGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDmKRKCFYIGDCDNHRVRKIAPEE 465
                                    53        63        73        83        93       103       113       123       133       143       153       163       173  ||   183       193       203       213       223   |   233       243       253       263       273       283       293      |303       313       323       333       343       353      |363       373       383       393       403       413       423       433       443       453       463  
                                                                                                                                                              176-MSE                                            227-MSE                                                 283-MSE          300-MSE                                                     360-MSE                                                                            443-MSE                  
                                                                                                                                                               177-MSE                                                                                                                     301-MSE

Chain C from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeee..eee...eeeeeee....hhh.eeeee..eeeeeeee...eeeee.........eeeeee.....eeeeee.....eee..eeeeeee..............ee...........eeee.......eeeee.....eeeee....eeeee......eeeeee.....eeeee.......eeeeee.hhhh...eeeeee.......ee......eee......eeeee......eeeeeee.......eeeee.....eeeeee....eeeeee...........eeeee.........ee.hhh....eeeeeeee.hhhh.....eeeeeee....eeeee....eeeeeee...........ee.............eee....eeeeeehhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hw6 C  42 SGTPFNPKEEIVVEKFLPTEGRKGTRVVVYGRNFGNDVSKVKVTIGGYPAKVINVKGESLLCICPSKAYEGDVKVSVVGDDEAELKSGVCEAKFDYQYNYVVTTFLGKLYENNTKWDVLAGPFDDCGAFDNIWRmmFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDmVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAmISSYDPATGTLTEEEVmmDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGmGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDmKRKCFYIGDCDNHRVRKIAPEE 465
                                    51        61        71        81        91       101       111       121       131       141       151       161       171    || 181       191       201       211       221     | 231       241       251       261       271       281 |     291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441 |     451       461    
                                                                                                                                                                176-MSE                                            227-MSE                                                 283-MSE          300-MSE                                                     360-MSE                                                                            443-MSE                  
                                                                                                                                                                 177-MSE                                                                                                                     301-MSE

Chain D from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeee..ee....eeeeeee....hhh.eeeee..eee.eeee...eeeee.........eeeeee.....eeeeee.....ee...eeeeeee..............ee...........eeee.......eeeee.....eeeee....eeeee......eeeeee.....eeeee.......eeeeee.hhhh...eeeeee.......ee......eee......eeeee......eeeeeee.......eeeee.....eeeeee....eeeeee...........eeeee.........ee.hhh....eeeeeeee.hhhh.....eeeeeee....eeeee....eeeeee............ee.............eee....eeeeeehhhheeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hw6 D  42 SGTPFNPKEEIVVEKFLPTEGRKGTRVVVYGRNFGNDVSKVKVTIGGYPAKVINVKGESLLCICPSKAYEGDVKVSVVGDDEAELKSGVCEAKFDYQYNYVVTTFLGKLYENNTKWDVLAGPFDDCGAFDNIWRmmFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDmVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAmISSYDPATGTLTEEEVmmDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGmGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDmKRKCFYIGDCDNHRVRKIAPEE 465
                                    51        61        71        81        91       101       111       121       131       141       151       161       171    || 181       191       201       211       221     | 231       241       251       261       271       281 |     291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441 |     451       461    
                                                                                                                                                                176-MSE                                            227-MSE                                                 283-MSE          300-MSE                                                     360-MSE                                                                            443-MSE                  
                                                                                                                                                                 177-MSE                                                                                                                     301-MSE

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Description