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(-) Description

Title :  CRYSTAL STRUCTURE OF TALLYSOMYCIN BIOSYNTHESIS PROTEIN TLMII
 
Authors :  C. Chang, L. Bigelow, J. Bearden, G. Babnigg, C. A. Bingman, R. Yennamal J. Lohman, M. Ma, B. Shen, G. N. Phillips Jr. , A. Joachimiak, Midwest For Structural Genomics (Mcsg), Enzyme Discovery For Natural Biosynthesis (Natpro)
Date :  06 Nov 12  (Deposition) - 21 Nov 12  (Release) - 16 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Natural Product Biosynthesis, Natpro, Enzyme Discovery For Natural Product Biosynthesis, Nonribosomal Peptide Synthetases, Biosynthetic Protein, Go. 119753 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, L. Bigelow, J. Bearden, G. Babnigg, C. A. Bingman, R. Yennamalli, J. Lohman, M. Ma, B. Shen, G. N. Phillips Jr. , A. Joachimiak
Crystal Structure Of Tallysomycin Biosynthesis Protein Tlmi
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TLMII
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PMCSG73
    Gene: TLMII
    Organism Scientific: STREPTOALLOTEICHUS HINDUSTANUS
    Organism Taxid: 2017

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 32)

Asymmetric Unit (2, 32)
No.NameCountTypeFull Name
1MSE28Mod. Amino AcidSELENOMETHIONINE
2SO44Ligand/IonSULFATE ION
Biological Unit 1 (2, 9)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 3 (1, 7)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE
2SO4-1Ligand/IonSULFATE ION
Biological Unit 4 (2, 8)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:191 , ARG A:194 , ARG A:195 , ARG D:362BINDING SITE FOR RESIDUE SO4 A 501
2AC2SOFTWAREALA A:34 , ARG A:36 , ILE A:392 , GLY A:393BINDING SITE FOR RESIDUE SO4 A 502
3AC3SOFTWAREARG B:36 , ILE B:392 , ARG B:397BINDING SITE FOR RESIDUE SO4 B 501
4AC4SOFTWAREARG D:36 , ILE D:392 , GLY D:393 , ARG D:397 , HOH D:615BINDING SITE FOR RESIDUE SO4 D 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HVM)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Pro A:347 -Pro A:348
2Pro B:347 -Pro B:348
3Glu C:229 -Pro C:230
4Pro C:347 -Pro C:348
5Gly D:207 -Pro D:208
6Pro D:347 -Pro D:348

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HVM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HVM)

(-) Exons   (0, 0)

(no "Exon" information available for 4HVM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:393
                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhhh..hhhh.eeeeeeeee...hhhhhhhhhhhhhhhhhhh.eeeee...eeeee......eeeee.....hhhhhhhhhhhhhhh..........eeeeeee....eeeeeeeee....hhhhhhhhhhhhhhhhh...hhhhh.hhhhh.......hhhhhhhhhhhhhhhhhhh......eeeeeeeehhhhhhhhh..hhhhhhhhhhhhhhhh.eeeeeeeeehhhhh.........eeeeeeeee.......hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh........hhhh.eee...eeee.hhhhhh..............eeeeeeee..eeeeeeee...hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hvm A   9 GLRRASFLQRGAWRWLREAPPAAAFAARGLLGSGRIDDDRLAAAADEVLDAFPLLRVNFVDDDGLWmRTRENADALVRSDLRGHPDPQARCVELLRADRDRPTDPERDPLVRLHLVRLSETDVVLGVVAHQmLLDARSRYmVLGAVWQAYYGRFRPAQYRDFAEVADFHPLDRETVRVARHRWWSRRLPALPVRGPPETSRLRVPGSRWQALTEPNGSLAmAALTAWWLWTQDSLYLSTEVDLRDHLQLGSVVGPLTDRVVFGVDLTGLREPSFRDLmSRTQAGFLDAVVHYLPYHDVVDLAVDLGVVTPPRVAARWDVAVHLVSIELFREADLIGDTWDGTDTWDGTTTDLSVGELGEDmVIVLDQRRSALLDGLDAAmAQAVADPSAPLPH 464
                                    18        28        38        48        58        68      | 78        88        98       108       118       128       138 |     148|      158       168       178       188       198   ||  215       225    || 241|      251 ||    277       287       297       307       317       327       337       347       357  ||   387     ||404       414       424|      441       451       461   
                                                                                             75-MSE                                                          140-MSE  149-MSE                                              202|                 230|    |        253|                                          315-MSE                                      360|         393|                     425-MSE 433|       451-MSE         
                                                                                                                                                                                                                            210                  237    |         270                                                                                        381          401                              441                       
                                                                                                                                                                                                                                                      242-MSE                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:414
                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhhh..hhhhheeeeeeeee...hhhhhhhhhhhhhhhhhhh.eeeee...eeeee......eeeee.....hhhhhhhhhhhhhhhh.........eeeeeee....eeeeeeeee....hhhhhhhhhhhhhhhhhh..hhhhh.hhhhhh......hhhhhhhhhhhhhhhhhhh......eeeeeeehhhhhhhhh........hhhhhhhhhhhhhhhh..eeeeeeeeehhhhh.........eeeeeeeee.......hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.............eee.....hhhhhhh.eee.hhhhhhhhhhh.eee............eeeeeeee..eeeeeeee...hhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hvm B   9 GLRRASFLQRGAWRWLREAPPAAAFAARGLLGSGRIDDDRLAAAADEVLDAFPLLRVNFVDDDGLWmRTRENADALVRSDLRGHPDPQARCVELLRADRDRPTDPERDPLVRLHLVRLSETDVVLGVVAHQmLLDARSRYmVLGAVWQAYYGRFRPAQYRDFAEVADFHPLDRETVRVARHRWWSRRLPALPVRGPPETSRLRVPGSRWQALTEPGGPLGGNGSLAmAALTAWWLWTQDSLYLSTEVDLRDHLQLGSVVGPLTDRVVFGVDLTGLREPSFRDLmSRTQAGFLDAVVHYLPYHDVVDLAVDLGVVTPPRVAARWDVAVHLCRNAPSSSLTSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDmVIVLDQRRSALLDGLDAAmAQAVADPSAPLP 463
                                    18        28        38        48        58        68      | 78        88        98       108       118       128       138 |     148|      158       168       178       188       198   ||  215       225       235      |245       271       281       291       301       311   |   321       331       341       351       361       382       392       402       412       422  |    432||     449 |     459    
                                                                                             75-MSE                                                          140-MSE  149-MSE                                              202|                             242-MSE    253|                                          315-MSE                                                370|                                        425-MSE 433|       451-MSE        
                                                                                                                                                                                                                            210                                         270                                                                                                  382                                                 441                      


Chain C from PDB  Type:PROTEIN  Length:401
                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhhhhhhhhhhh..hhhh.eeeeeeeee...hhhhhhhhhhhhhhhhhhh.eeeee...eeeee......eeeee.....hhhhhhhhhhhhhhh..........eeeeeee....eeeeeeeee....hhhhhhhhhhhhhhhhh...hhhhh.hhhhh.......hhhhhhhhhhhhhhhh..........eeeeeeeehhhhhhhhh..hhhhhhhhhhhhhh..eeeeeeeehhhhh.........eeeeeeee........hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh........hhhh.eee....eeee.hhhhhh.....hhhhh...........eeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hvm C   9 GLRRASFLQRGAWRWLREAPPAAAFAARGLLGSGRIDDDRLAAAADEVLDAFPLLRVNFVDDDGLWmRTRENADALVRSDLRGHPDPQARCVELLRADRDRPTDPERDPLVRLHLVRLSETDVVLGVVAHQmLLDARSRYmVLGAVWQAYYGRFRPAQYRDFAEVADFHPLDRETVRVARHRWWSRRLPALPVPVGPPETSRLRVPGSRWQALTEPGSLAmAALTAWWLWTQSLYLSTEVDLRDHLQLGSVVGPLTDRVVFGVDLTGLREPSFRDLmSRTQAGFLDAVVHYLPYHDVVDLAVDLGVVTPPRVAARWDVAVHLCVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDmVIVLDQRRTSALLDGLDAAmAQAVADPSAPLPH 464
                                    18        28        38        48        58        68      | 78        88        98       108       118       128       138 |     148|      158       168       178       188       198  ||   214       224     ||241|      251 ||    278       288       298       308      |318       328       338       348       358  ||   387       397       407       417       427      |443       453       463 
                                                                                             75-MSE                                                          140-MSE  149-MSE                                             201|                   230|   |        253|                                         315-MSE                                       361|                                         425-MSE  434|       451-MSE         
                                                                                                                                                                                                                           208                    238   |         271                                                                                        381                                                   441                       
                                                                                                                                                                                                                                                      242-MSE                                                                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:419
                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.hhhhhhhhhhhh.......eeeeeeeee...hhhhhhhhhhhhhhhh....eeee.....eeee......eeeee.....hhhhhhhhhhhhhhhh.........eeeeeee....eeeeeeeee....hhhhhhhhhhhhhhhhh...hhhhh.hhhhh.......hhhhhhhhhhhhhhhhhhh..........eeeeeeehhhhhhhhhh.......hhhhhhhhhhhhhhhhh.eeeeeeeeehhhhh.........eeeeeeeee.......hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh........hhhh.eee.....hhhhhh..eeee.hhhhh.hhhhh.ee.............eeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hvm D  10 LRRASFLQRGAWRWLREAPPAAAFAARGLLGSGRIDDDRLAAAADEVLDAFPLLRVNFVDDDGLWmRTRENADALVRSDLRGHPDPQARCVELLRADRDRPTDPERDPLVRLHLVRLSETDVVLGVVAHQmLLDARSRYmVLGAVWQAYYGRFRPAQYRDFAEVADFHPLDRETVRVARHRWWSRRLPALPVRGGPVGPPETSRLRVPGSRWQALTEPGGPLGGNGSLAmAALTAWWLWTQDSLYLSTEVDLRDHLQLGSVVGPLTDRVVFGVDLTGLREPSFRDLmSRTQAGFLDAVVHYLPYHDVVDLAVDLGVVTPPRVAARWDVAVHLCRNAPSSSLTVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDmVIVLDQRRTSALLDGLDAAmAQAVADPSAPLP 463
                                    19        29        39        49        59        69     |  79        89        99       109       119       129       139|      149       159       169       179       189       199   ||  212       222       232       242       252||     278       288       298       308      |318       328       338       348       358       368 ||    388       398       408       418      |428     ||444      |454         
                                                                                            75-MSE                                                          140-MSE  149-MSE                                               203|                                242-MSE    253|                                          315-MSE                                                370|                                         425-MSE  434|       451-MSE        
                                                                                                                                                                                                                            207                                            270                                                                                                  381                                                   441
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HVM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HVM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HVM)

(-) Gene Ontology  (0, 0)

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