4HVM - JenaLib

Title :   CRYSTAL STRUCTURE OF TALLYSOMYCIN BIOSYNTHESIS PROTEIN TLMII

Authors :   C. Chang, L. Bigelow, J. Bearden, G. Babnigg, C. A. Bingman, R. Yennamal J. Lohman, M. Ma, B. Shen, G. N. Phillips Jr. , A. Joachimiak, Midwest For Structural Genomics (Mcsg), Enzyme Discovery For Natural Biosynthesis (Natpro)

Date :   06 Nov 12 (Deposition) - 21 Nov 12 (Release) - 16 Apr 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Natural Product Biosynthesis, Natpro, Enzyme Discovery For Natural Product Biosynthesis, Nonribosomal Peptide Synthetases, Biosynthetic Protein, Go. 119753 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Chang, L. Bigelow, J. Bearden, G. Babnigg, C. A. Bingman, R. Yennamalli, J. Lohman, M. Ma, B. Shen, G. N. Phillips Jr. , A. Joachimiak
Crystal Structure Of Tallysomycin Biosynthesis Protein Tlmi
To Be Published
PubMed: search

Compounds

Molecule 1 - TLMII
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)MAGIC
	Expression System Taxid	:	562
	Expression System Vector Type	:	PMCSG73
	Gene	:	TLMII
	Organism Scientific	:	STREPTOALLOTEICHUS HINDUSTANUS
	Organism Taxid	:	2017

Structural Features

Chains, Units

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 32)

Asymmetric Unit (2, 32)

No.	Name	Count	Type	Full Name
1	MSE	28	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 9)

No.	Name	Count	Type	Full Name
1	MSE	7	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 8)

No.	Name	Count	Type	Full Name
1	MSE	7	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 3 (1, 7)

No.	Name	Count	Type	Full Name
1	MSE	7	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 4 (2, 8)

No.	Name	Count	Type	Full Name
1	MSE	7	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	1	Ligand/Ion	SULFATE ION

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TRP A:191 , ARG A:194 , ARG A:195 , ARG D:362	BINDING SITE FOR RESIDUE SO4 A 501
2	AC2	SOFTWARE	ALA A:34 , ARG A:36 , ILE A:392 , GLY A:393	BINDING SITE FOR RESIDUE SO4 A 502
3	AC3	SOFTWARE	ARG B:36 , ILE B:392 , ARG B:397	BINDING SITE FOR RESIDUE SO4 B 501
4	AC4	SOFTWARE	ARG D:36 , ILE D:392 , GLY D:393 , ARG D:397 , HOH D:615	BINDING SITE FOR RESIDUE SO4 D 501

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:393
                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhhh..hhhh.eeeeeeeee...hhhhhhhhhhhhhhhhhhh.eeeee...eeeee......eeeee.....hhhhhhhhhhhhhhh..........eeeeeee....eeeeeeeee....hhhhhhhhhhhhhhhhh...hhhhh.hhhhh.......hhhhhhhhhhhhhhhhhhh......eeeeeeeehhhhhhhhh..hhhhhhhhhhhhhhhh.eeeeeeeeehhhhh.........eeeeeeeee.......hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh........hhhh.eee...eeee.hhhhhh..............eeeeeeee..eeeeeeee...hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hvm A   9 GLRRASFLQRGAWRWLREAPPAAAFAARGLLGSGRIDDDRLAAAADEVLDAFPLLRVNFVDDDGLWmRTRENADALVRSDLRGHPDPQARCVELLRADRDRPTDPERDPLVRLHLVRLSETDVVLGVVAHQmLLDARSRYmVLGAVWQAYYGRFRPAQYRDFAEVADFHPLDRETVRVARHRWWSRRLPALPVRGPPETSRLRVPGSRWQALTEPNGSLAmAALTAWWLWTQDSLYLSTEVDLRDHLQLGSVVGPLTDRVVFGVDLTGLREPSFRDLmSRTQAGFLDAVVHYLPYHDVVDLAVDLGVVTPPRVAARWDVAVHLVSIELFREADLIGDTWDGTDTWDGTTTDLSVGELGEDmVIVLDQRRSALLDGLDAAmAQAVADPSAPLPH 464
                                    18        28        38        48        58        68      | 78        88        98       108       118       128       138 |     148|      158       168       178       188       198   ||  215       225    || 241|      251 ||    277       287       297       307       317       327       337       347       357  ||   387     ||404       414       424|      441       451       461   
                                                                                             75-MSE                                                          140-MSE  149-MSE                                              202|                 230|    |        253|                                          315-MSE                                      360|         393|                     425-MSE 433|       451-MSE         
                                                                                                                                                                                                                            210                  237    |         270                                                                                        381          401                              441                       
                                                                                                                                                                                                                                                      242-MSE

Chain B from PDB  Type:PROTEIN  Length:414
                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhhh..hhhhheeeeeeeee...hhhhhhhhhhhhhhhhhhh.eeeee...eeeee......eeeee.....hhhhhhhhhhhhhhhh.........eeeeeee....eeeeeeeee....hhhhhhhhhhhhhhhhhh..hhhhh.hhhhhh......hhhhhhhhhhhhhhhhhhh......eeeeeeehhhhhhhhh........hhhhhhhhhhhhhhhh..eeeeeeeeehhhhh.........eeeeeeeee.......hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.............eee.....hhhhhhh.eee.hhhhhhhhhhh.eee............eeeeeeee..eeeeeeee...hhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hvm B   9 GLRRASFLQRGAWRWLREAPPAAAFAARGLLGSGRIDDDRLAAAADEVLDAFPLLRVNFVDDDGLWmRTRENADALVRSDLRGHPDPQARCVELLRADRDRPTDPERDPLVRLHLVRLSETDVVLGVVAHQmLLDARSRYmVLGAVWQAYYGRFRPAQYRDFAEVADFHPLDRETVRVARHRWWSRRLPALPVRGPPETSRLRVPGSRWQALTEPGGPLGGNGSLAmAALTAWWLWTQDSLYLSTEVDLRDHLQLGSVVGPLTDRVVFGVDLTGLREPSFRDLmSRTQAGFLDAVVHYLPYHDVVDLAVDLGVVTPPRVAARWDVAVHLCRNAPSSSLTSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDmVIVLDQRRSALLDGLDAAmAQAVADPSAPLP 463
                                    18        28        38        48        58        68      | 78        88        98       108       118       128       138 |     148|      158       168       178       188       198   ||  215       225       235      |245       271       281       291       301       311   |   321       331       341       351       361       382       392       402       412       422  |    432||     449 |     459    
                                                                                             75-MSE                                                          140-MSE  149-MSE                                              202|                             242-MSE    253|                                          315-MSE                                                370|                                        425-MSE 433|       451-MSE        
                                                                                                                                                                                                                            210                                         270                                                                                                  382                                                 441

Chain C from PDB  Type:PROTEIN  Length:401
                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhhhhhhhhhhh..hhhh.eeeeeeeee...hhhhhhhhhhhhhhhhhhh.eeeee...eeeee......eeeee.....hhhhhhhhhhhhhhh..........eeeeeee....eeeeeeeee....hhhhhhhhhhhhhhhhh...hhhhh.hhhhh.......hhhhhhhhhhhhhhhh..........eeeeeeeehhhhhhhhh..hhhhhhhhhhhhhh..eeeeeeeehhhhh.........eeeeeeee........hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh........hhhh.eee....eeee.hhhhhh.....hhhhh...........eeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hvm C   9 GLRRASFLQRGAWRWLREAPPAAAFAARGLLGSGRIDDDRLAAAADEVLDAFPLLRVNFVDDDGLWmRTRENADALVRSDLRGHPDPQARCVELLRADRDRPTDPERDPLVRLHLVRLSETDVVLGVVAHQmLLDARSRYmVLGAVWQAYYGRFRPAQYRDFAEVADFHPLDRETVRVARHRWWSRRLPALPVPVGPPETSRLRVPGSRWQALTEPGSLAmAALTAWWLWTQSLYLSTEVDLRDHLQLGSVVGPLTDRVVFGVDLTGLREPSFRDLmSRTQAGFLDAVVHYLPYHDVVDLAVDLGVVTPPRVAARWDVAVHLCVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDmVIVLDQRRTSALLDGLDAAmAQAVADPSAPLPH 464
                                    18        28        38        48        58        68      | 78        88        98       108       118       128       138 |     148|      158       168       178       188       198  ||   214       224     ||241|      251 ||    278       288       298       308      |318       328       338       348       358  ||   387       397       407       417       427      |443       453       463 
                                                                                             75-MSE                                                          140-MSE  149-MSE                                             201|                   230|   |        253|                                         315-MSE                                       361|                                         425-MSE  434|       451-MSE         
                                                                                                                                                                                                                           208                    238   |         271                                                                                        381                                                   441                       
                                                                                                                                                                                                                                                      242-MSE

Chain D from PDB  Type:PROTEIN  Length:419
                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.hhhhhhhhhhhh.......eeeeeeeee...hhhhhhhhhhhhhhhh....eeee.....eeee......eeeee.....hhhhhhhhhhhhhhhh.........eeeeeee....eeeeeeeee....hhhhhhhhhhhhhhhhh...hhhhh.hhhhh.......hhhhhhhhhhhhhhhhhhh..........eeeeeeehhhhhhhhhh.......hhhhhhhhhhhhhhhhh.eeeeeeeeehhhhh.........eeeeeeeee.......hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh........hhhh.eee.....hhhhhh..eeee.hhhhh.hhhhh.ee.............eeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hvm D  10 LRRASFLQRGAWRWLREAPPAAAFAARGLLGSGRIDDDRLAAAADEVLDAFPLLRVNFVDDDGLWmRTRENADALVRSDLRGHPDPQARCVELLRADRDRPTDPERDPLVRLHLVRLSETDVVLGVVAHQmLLDARSRYmVLGAVWQAYYGRFRPAQYRDFAEVADFHPLDRETVRVARHRWWSRRLPALPVRGGPVGPPETSRLRVPGSRWQALTEPGGPLGGNGSLAmAALTAWWLWTQDSLYLSTEVDLRDHLQLGSVVGPLTDRVVFGVDLTGLREPSFRDLmSRTQAGFLDAVVHYLPYHDVVDLAVDLGVVTPPRVAARWDVAVHLCRNAPSSSLTVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDmVIVLDQRRTSALLDGLDAAmAQAVADPSAPLP 463
                                    19        29        39        49        59        69     |  79        89        99       109       119       129       139|      149       159       169       179       189       199   ||  212       222       232       242       252||     278       288       298       308      |318       328       338       348       358       368 ||    388       398       408       418      |428     ||444      |454         
                                                                                            75-MSE                                                          140-MSE  149-MSE                                               203|                                242-MSE    253|                                          315-MSE                                                370|                                         425-MSE  434|       451-MSE        
                                                                                                                                                                                                                            207                                            270                                                                                                  381                                                   441

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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Description