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(-) Description

Title :  STRUCTURE AND FUNCTION OF AVTR, A NOVEL TRANSCRIPTIONAL REGULATOR FROM A HYPERTHERMOPHILIC ARCHAEAL LIPOTHRIXVIRUS
 
Authors :  N. Peixeiro, J. Keller, B. Collinet, N. Leulliot, V. Campanacci, D. Cor C. Cambillau, K. R. Nitta, R. Vincentelli, P. Forterre, D. Prangishvi G. Sezonov, H. Van Tilbeurgh
Date :  05 Nov 12  (Deposition) - 21 Nov 12  (Release) - 26 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Ribbon-Helix-Helix, Dna, Transcription, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Peixeiro, J. Keller, B. Collinet, N. Leulliot, V. Campanacci, D. Cortez, C. Cambillau, K. R. Nitta, R. Vincentelli, P. Forterre, D. Prangishvili, G. Sezonov, H. Van Tilbeurgh
Structure And Function Of Avtr, A Novel Transcriptional Regulator From A Hyperthermophilic Archaeal Lipothrixvirus.
J. Virol. V. 87 124 2013
PubMed-ID: 23055559  |  Reference-DOI: 10.1128/JVI.01306-12

(-) Compounds

Molecule 1 - AVTR
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET9
    Expression System Strain: ROSETTA(DE3) PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GP29
    Organism Scientific: ACIDIANUS FILAMENTOUS VIRUS 6
    Organism Taxid: 346882

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4HV0)

(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:91
                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeehhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.........eeee..eeeeee....hhhhhhhhhhhhhhhh.hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 4hv0 A   2 mVTVEEEVYEFLKKKAKEEGTSVPAVIRKILKEYFGIEDRTREGSYIIVNGKKYYRINCKLEKRNEILVKLELKKRGTTLNRFLKEmImIT  99
                            |       11        21        31        41 ||     58        68        78        88      | 98 
                            |                                       43|                                          95-MSE
                            2-MSE                                    51                                            97-MSE


Chain B from PDB  Type:PROTEIN  Length:92
                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeehhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........eeee..eeeeee....hhhhhhhhhhhhhhh..hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 4hv0 B   2 mVTVEEEVYEFLKKKAKEEGTSVPAVIRKILKEYFGIEDRTRDYGSYIIVNGKKYYRINCKLEKRNEILVKLELKKRGTTLNRFLKEmImIT  99
                            |       11        21        31        41   ||   57        67        77        87       |97  
                            |                                         45|                                         95-MSE
                            2-MSE                                      52                                           97-MSE


Chain C from PDB  Type:PROTEIN  Length:90
                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeehhhhhhhhhhhhhh..hhhhhhhhhhhhhhh......eeeee..eeeeee....hhhhhhhhhhhhhhh..hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                 4hv0 C   2 mVTVEEEVYEFLKKKAKEEGTSVPAVIRKILKEYFGIEDRTGSYIIVNGKKYYRINCKLEKRNEILVKLELKKRGTTLNRFLKEmImITV 100
                            |       11        21        31        41||      60        70        80        90    | |100
                            |                                      42|                                         95-MSE 
                            2-MSE                                   52                                           97-MSE


Chain D from PDB  Type:PROTEIN  Length:99
                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeehhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh................eeee..eeeeee....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 4hv0 D   2 mVTVEEEVYEFLKKKAKEEGTSVPAVIRKILKEYFGIEDRTRDYKRQDLEGSYIIVNGKKYYRINCKLEKRNEILVKLELKKRGTTLNRFLKEmImITV 100
                            |       11        21        31        41        51        61        71        81        91   | |   
                            |                                                                                           95-MSE 
                            2-MSE                                                                                         97-MSE
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