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(-) Description

Title :  THE STRUCTURE OF ARABIDOPSIS THALIANA KAI2
 
Authors :  R. Bythell-Douglas, M. T. Waters, A. Scaffidi, G. R. Flematti, S. M. Smi C. S. Bond
Date :  29 Oct 12  (Deposition) - 27 Feb 13  (Release) - 27 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha/Beta Hydrolase, Signaling Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Bythell-Douglas, M. T. Waters, A. Scaffidi, G. R. Flematti, S. M. Smith, C. S. Bond
The Structure Of The Karrikin-Insensitive Protein (Kai2) In Arabidopsis Thaliana
Plos One V. 8 54758 2013
PubMed-ID: 23349965  |  Reference-DOI: 10.1371/JOURNAL.PONE.0054758

(-) Compounds

Molecule 1 - HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST17
    Expression System Strain: ROSETTA
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AT4G37470, F6G17.120
    Organism Common: MOUSE-EAR CRESS, THALE-CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: KARRIKIN-INSENSITIVE 2, PUTATIVE UNCHARACTERIZED PROTEIN AT4G37470, PUTATIVE UNCHARACTERIZED PROTEIN AT4G37470, PUTATIVE UNCHARACTERIZED PROTEIN F6G17.120

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 5)

Asymmetric/Biological Unit (5, 5)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3NA1Ligand/IonSODIUM ION
4PO41Ligand/IonPHOSPHATE ION
5TAM1Ligand/IonTRIS(HYDROXYETHYL)AMINOMETHANE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:109 , PHE A:112 , HOH A:576 , HOH A:587BINDING SITE FOR RESIDUE CL A 301
2AC2SOFTWAREHIS A:229 , LEU A:232 , CYS A:234 , SER A:236 , HOH A:573BINDING SITE FOR RESIDUE NA A 302
3AC3SOFTWAREHIS A:39 , ARG A:265 , HOH A:478 , HOH A:531 , HOH A:600 , HOH A:760 , HOH A:796 , HOH A:797BINDING SITE FOR RESIDUE PO4 A 303
4AC4SOFTWARESER A:15 , VAL A:41 , ASP A:42 , ASP A:63 , HOH A:673BINDING SITE FOR RESIDUE GOL A 304
5AC5SOFTWAREPHE A:26 , SER A:95 , TYR A:124 , PHE A:157 , ILE A:193 , PHE A:194 , ALA A:219 , HIS A:246 , HOH A:409 , HOH A:427BINDING SITE FOR RESIDUE TAM A 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HRY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HRY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HRY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HRY)

(-) Exons   (0, 0)

(no "Exon" information available for 4HRY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:268
                                                                                                                                                                                                                                                                                                            
               SCOP domains d4hrya_ A: automated matches                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh..eeee....eeeee.....hhhhhh.hhhhh....eeee.........hhhhh..hhhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh...eeeeeeee....hhhhhhhhhhhh...eeeeeeeee..hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hry A   2 GVVEEAHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDGHLPQLSSPDSVIPVILRHIRNDIA 269
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HRY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HRY)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KAI2_ARATH | Q9SZU7: 3w06 4hrx 4hta 4ih1 4jym 4jyp

(-) Related Entries Specified in the PDB File

4hrx THE SAME PROTEIN IN THE SPACE GROUP P21 AT LOWER RESOLUTION
4hta