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(-) Description

Title :  PCGF1 UB FOLD (RAWUL)/BCORL1 PUFD COMPLEX
 
Authors :  S. E. Junco, R. Wang, J. Gaipa, A. B. Taylor, M. D. Gearhart, V. J. Bardwel P. J. Hart, C. A. Kim
Date :  24 Oct 12  (Deposition) - 01 May 13  (Release) - 01 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Polycomb, Bcorl1, Pcgf1, Rawul, Nspc1, E3-Ligase, Chromosomal Protein, Transcription Regulation, Chromatin Regulator, Transcription Repressor, Ligase, Metal-Binding, Nucleus, Repressor, Transcription, Ubl Conjugation Pathway, Zinc-Finger (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. E. Junco, R. Wang, J. C. Gaipa, A. B. Taylor, V. Schirf, M. D. Gearhart V. J. Bardwell, B. Demeler, P. J. Hart, C. A. Kim
Structure Of The Polycomb Group Protein Pcgf1 In Complex With Bcor Reveals Basis For Binding Selectivity Of Pcgf Homologs.
Structure V. 21 665 2013
PubMed-ID: 23523425  |  Reference-DOI: 10.1016/J.STR.2013.02.013

(-) Compounds

Molecule 1 - BCL-6 COREPRESSOR-LIKE PROTEIN 1
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-30A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1594-1711
    Gene: BCORL1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: BCOR-L1, BCOR-LIKE PROTEIN 1
 
Molecule 2 - POLYCOMB GROUP RING FINGER PROTEIN 1
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-3C
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 167-255
    Gene: NSPC1, PCGF1, RNF68
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NERVOUS SYSTEM POLYCOMB-1, NSPC1, RING FINGER PROTEIN 68, PCGF1 UB FOLD (RAWUL)

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1PO44Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1PO42Ligand/IonPHOSPHATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1PO42Ligand/IonPHOSPHATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:1681 , GLY A:1682 , HOH A:1940BINDING SITE FOR RESIDUE PO4 A 1801
2AC2SOFTWAREGLY B:164 , THR B:165 , ARG B:166 , GLN B:168 , SER B:195 , ARG B:197 , HOH B:408 , HOH B:445BINDING SITE FOR RESIDUE PO4 B 301
3AC3SOFTWAREHIS B:209 , HOH B:418 , SER C:1708 , ASN C:1710BINDING SITE FOR RESIDUE PO4 C 1801
4AC4SOFTWAREHOH C:1958 , GLY D:164 , THR D:165 , ARG D:166 , GLN D:168 , SER D:195 , ARG D:197 , HOH D:427BINDING SITE FOR RESIDUE PO4 D 301

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:1709 -C:1709

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ser B:246 -Pro B:247
2Ser D:246 -Pro D:247

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HPM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HPM)

(-) Exons   (0, 0)

(no "Exon" information available for 4HPM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:118
                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.......eee........eeeeehhhhhhhhh.hhhhhhhhh....eeeeehhhhhhhhh........................eeeeee.hhhhhhhh..eeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                4hpm A 1594 DDFMFELSDKPLLPCYNLQVSVSRGPCNWFLFSDVLKRLKLSSRIFQARFPHFEITTMPKAEFYRQVASSQLLTPAERPGGLDDRSPPGSSETVELVRYEPDLLRLLGSEVEFQSCNS 1711
                                  1603      1613      1623      1633      1643      1653      1663      1673      1683      1693      1703        


Chain B from PDB  Type:PROTEIN  Length:81
                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee...eeeee...hhhhhhhhhhhhhh.hhhhheeee..ee.....hhhhhhhhhh......eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                4hpm B  163 QGTREQLNLCLERLSNKYVRCSVRAEVRHLRRVLCHRLMLNPQHVQLLFDNEVLPDHMTMKQIWLSRWFGKPSPLLLQYSV  254
                                   172    || 193       203       213       223       233       243       253 
                                        177|                                                                 
                                         189                                                                 


Chain C from PDB  Type:PROTEIN  Length:107
                                                                                                                                            
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.......eee........eeeeehhhhhhhhh.hhhhhhhhh....eeeeehhhhhhhhhh.............eeeeee.hhhhhhhh..eeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                4hpm C 1595 DFMFELSDKPLLPCYNLQVSVSRGPCNWFLFSDVLKRLKLSSRIFQARFPHFEITTMPKAEFYRQVASSQLLTPAERPSSETVELVRYEPDLLRLLGSEVEFQSCNS 1711
                                  1604      1614      1624      1634      1644      1654      1664      1684      1694      1704       
                                                                                                      1672|                            
                                                                                                       1683                            


Chain D from PDB  Type:PROTEIN  Length:82
                                                                                                                   
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee......eeeee...hhhhhhhhhhhhhh......eeee..ee.....hhhhhhhhhh......eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                4hpm D  164 GTREQLNLCLERLVLQNKYVRCSVRAEVRHLRRVLCHRLMLNPQHVQLLFDNEVLPDHMTMKQIWLSRWFGKPSPLLLQYSV  254
                                   173  ||   192       202       212       222       232       242       252  
                                      176|                                                                    
                                       186
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HPM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HPM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HPM)

(-) Gene Ontology  (12, 15)

Asymmetric Unit(hide GO term definitions)

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  4hpm
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BCORL_HUMAN | Q5H9F3: 5jh5
        PCGF1_HUMAN | Q9BSM1: 4hpl 5jh5

(-) Related Entries Specified in the PDB File

4hpl