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(-) Description

Title :  CRYSTAL STRUCTURE OF TET3 IN COMPLEX WITH A CPG DSDNA
 
Authors :  X. Chao, W. Tempel, C. Bian, C. Bountra, C. H. Arrowsmith, A. M. Edwards, Structural Genomics Consortium (Sgc)
Date :  23 Oct 12  (Deposition) - 05 Dec 12  (Release) - 19 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Cxxc, Dna Methylation, Dna Binding Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Xu, C. Xu, A. Kato, W. Tempel, J. G. Abreu, C. Bian, Y. Hu, D. Hu, B. Zhao T. Cerovina, J. Diao, F. Wu, H. H. He, Q. Cui, E. Clark, C. Ma, A. Barbara, G. J. Veenstra, G. Xu, U. B. Kaiser, X. S. Liu, S. P. Sugrue, X. He, J. Min, Y. Kato, Y. G. Shi
Tet3 Cxxc Domain And Dioxygenase Activity Cooperatively Regulate Key Genes For Xenopus Eye And Neural Development.
Cell(Cambridge, Mass. ) V. 151 1200 2012
PubMed-ID: 23217707  |  Reference-DOI: 10.1016/J.CELL.2012.11.014

(-) Compounds

Molecule 1 - DNA (5'-D(*GP*CP*CP*AP*AP*CP*GP*TP*TP*GP*GP*C)-3')
    Chains: A, B
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - LOC100036628 PROTEIN
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28-MHL
    Expression System Strain: BL21-V2R-PRARE2
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Common: WESTERN CLAWED FROG
    Organism Scientific: XENOPUS (SILURANA) TROPICALIS
    Organism Taxid: 8364

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1UNX3Ligand/IonUNKNOWN ATOM OR ION
2ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS C:65 , CYS C:68 , CYS C:71 , CYS C:98BINDING SITE FOR RESIDUE ZN C 201
2AC2SOFTWARECYS C:77 , CYS C:80 , CYS C:83 , CYS C:93BINDING SITE FOR RESIDUE ZN C 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HP3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HP3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HP3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HP3)

(-) Exons   (0, 0)

(no "Exon" information available for 4HP3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:12
                                            
                 4hp3 A   1 GCCAACGTTGGC  12
                                    10  


Chain B from PDB  Type:DNA  Length:12
                                            
                 4hp3 B   1 GCCAACGTTGGC  12
                                    10  


Chain C from PDB  Type:PROTEIN  Length:51
                                                                                   
               SCOP domains --------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh......hhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------- Transcript
                 4hp3 C  59 NKKRKRCGVCVPCLRKEPCGACYNCVNRSTSHQICKMRKCEQLKKKRVVPM 109
                                    68        78        88        98       108
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HP3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HP3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HP3)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0JP82_XENTR | A0JP82: 4hp1

(-) Related Entries Specified in the PDB File

4hp1