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(-) Description

Title :  CRYSTAL STRUCTURE OF FAB C179 IN COMPLEX WITH A H2N2 INFLUENZA VIRUS HEMAGGLUTININ
 
Authors :  C. Dreyfus, I. A. Wilson
Date :  17 Oct 12  (Deposition) - 17 Apr 13  (Release) - 24 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Neutralizing Antibodies, Antibody Affinity, Antigens, Epitopes, Glycosylation, Hemagglutinin Glycoproteins, Immunoglobulin Fab Fragments, H2N2 Subtype, Influenza Vaccines, Avian Flu, Envelope Protein, Viral Protein-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Dreyfus, D. C. Ekiert, I. A. Wilson
Structure Of A Classical Broadly Neutralizing Stem Antibody In Complex With A Pandemic H2 Influenza Virus Hemagglutinin
J. Virol. V. 87 7149 2013
PubMed-ID: 23552413  |  Reference-DOI: 10.1128/JVI.02975-12

(-) Compounds

Molecule 1 - HEMAGGLUTININ HA1
    Chains: A, C, E
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Gene: HA
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 387161
    Strain: A/JAPAN/305/1957 H2N2
 
Molecule 2 - HEMAGGLUTININ HA2
    Chains: B, D, F
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Gene: HA
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 387161
    Strain: A/JAPAN/305/1957 H2N2
 
Molecule 3 - FAB C179 HEAVY CHAIN
    Chains: G, I, K
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 4 - FAB C179 LIGHT CHAIN
    Chains: H, J, L
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 27)

Asymmetric/Biological Unit (5, 27)
No.NameCountTypeFull Name
1BMA3Ligand/IonBETA-D-MANNOSE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MAN1Ligand/IonALPHA-D-MANNOSE
4NAG15Ligand/IonN-ACETYL-D-GLUCOSAMINE
5SO47Ligand/IonSULFATE ION

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:169 , TRP A:240 , THR A:242BINDING SITE FOR RESIDUE NAG A 401
02AC2SOFTWARELYS A:280 , ASN A:289 , NAG A:403 , SER G:74BINDING SITE FOR RESIDUE NAG A 402
03AC3SOFTWARENAG A:402 , BMA A:404 , THR G:24 , GLN G:75 , SER G:76BINDING SITE FOR RESIDUE NAG A 403
04AC4SOFTWARENAG A:403BINDING SITE FOR RESIDUE BMA A 404
05AC5SOFTWAREASN A:21BINDING SITE FOR RESIDUE NAG A 405
06AC6SOFTWARELYS B:38 , GLU B:39 , THR H:33BINDING SITE FOR RESIDUE SO4 B 201
07AC7SOFTWAREGLU B:147 , ASN B:154 , THR B:156BINDING SITE FOR RESIDUE NAG B 202
08AC8SOFTWAREGLU C:278 , ASN C:289 , NAG C:402 , SER I:74 , GLN I:75BINDING SITE FOR RESIDUE NAG C 401
09AC9SOFTWARENAG C:401 , BMA C:403 , GLY I:23 , GLN I:75BINDING SITE FOR RESIDUE NAG C 402
10BC1SOFTWARENAG C:402 , MAN C:404 , GLN I:75BINDING SITE FOR RESIDUE BMA C 403
11BC2SOFTWAREASN A:276 , BMA C:403BINDING SITE FOR RESIDUE MAN C 404
12BC3SOFTWAREASN C:169 , TRP C:240 , NAG C:406BINDING SITE FOR RESIDUE NAG C 405
13BC4SOFTWARENAG C:405BINDING SITE FOR RESIDUE NAG C 406
14BC5SOFTWAREALA D:36 , ASP D:37 , LYS D:38 , GLU D:39 , THR J:33BINDING SITE FOR RESIDUE SO4 D 201
15BC6SOFTWAREASN E:169 , THR E:242BINDING SITE FOR RESIDUE NAG E 401
16BC7SOFTWAREASN E:48 , CYS E:277BINDING SITE FOR RESIDUE SO4 E 402
17BC8SOFTWAREASN E:289 , NAG E:404 , GLN K:75BINDING SITE FOR RESIDUE NAG E 403
18BC9SOFTWARENAG E:403 , BMA E:405 , GLY K:23 , ILE K:77BINDING SITE FOR RESIDUE NAG E 404
19CC1SOFTWARENAG E:404BINDING SITE FOR RESIDUE BMA E 405
20CC2SOFTWAREASN E:21 , NAG E:407BINDING SITE FOR RESIDUE NAG E 406
21CC3SOFTWARENAG E:406BINDING SITE FOR RESIDUE NAG E 407
22CC4SOFTWAREALA F:36 , LYS F:38 , GLU F:39 , THR L:33BINDING SITE FOR RESIDUE SO4 F 201
23CC5SOFTWAREGLU F:147 , ASN F:154 , THR F:156BINDING SITE FOR RESIDUE NAG F 202
24CC6SOFTWAREALA B:35 , TRP H:34 , TYR H:94BINDING SITE FOR RESIDUE SO4 H 301
25CC7SOFTWARETRP J:34 , TYR J:94BINDING SITE FOR RESIDUE SO4 J 301
26CC8SOFTWAREALA J:11 , SER J:12BINDING SITE FOR RESIDUE EDO J 302
27CC9SOFTWAREALA F:35 , TRP L:34 , TYR L:94BINDING SITE FOR RESIDUE SO4 L 301

(-) SS Bonds  (27, 27)

Asymmetric/Biological Unit
No.Residues
1A:14 -B:137
2A:52 -A:277
3A:64 -A:76
4A:281 -A:305
5B:144 -B:148
6C:14 -D:137
7C:52 -C:277
8C:64 -C:76
9C:281 -C:305
10D:144 -D:148
11E:14 -F:137
12E:52 -E:277
13E:64 -E:76
14E:281 -E:305
15F:144 -F:148
16G:22 -G:92
17G:140 -G:195
18H:25 -H:90
19H:136 -H:196
20I:22 -I:92
21I:140 -I:195
22J:25 -J:90
23J:136 -J:196
24K:22 -K:92
25K:140 -K:195
26L:25 -L:90
27L:136 -L:196

(-) Cis Peptide Bonds  (18, 18)

Asymmetric/Biological Unit
No.Residues
1Phe G:146 -Pro G:147
2Glu G:148 -Pro G:149
3Trp G:188 -Pro G:189
4Ser H:9 -Pro H:10
5Thr H:96 -Pro H:97
6Tyr H:142 -Pro H:143
7Phe I:146 -Pro I:147
8Glu I:148 -Pro I:149
9Trp I:188 -Pro I:189
10Ser J:9 -Pro J:10
11Thr J:96 -Pro J:97
12Tyr J:142 -Pro J:143
13Phe K:146 -Pro K:147
14Glu K:148 -Pro K:149
15Trp K:188 -Pro K:189
16Ser L:9 -Pro L:10
17Thr L:96 -Pro L:97
18Tyr L:142 -Pro L:143

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HLZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HLZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4HLZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4hlza_ A: Hemagglutinin                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee.......ee.......ee...eee.ee......eeee.....ee....hhhhhhhhhhhhhhhh.......eee...........eee.hhhhhhhhhh.eeeeeeee..hhhhh........eeeeee..eee....eee..........eeeeee......eeeeeeeee..hhhhhhhhh......eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeeeeee....eee....eeeeee.ee...........ee......ee...ee......eee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4hlz A    9 PGDQICIGYHANNSTEKVDTILERNVTVTHAKDILEKTHNGKLCKLNGIPPLELGDCSIAGWLLGNPECDRLLSVPEWSYIMEKENPRDGLCYPGSFNDYEELKHLLSSVKHFEKVKILPKDRWTQHTTTGGSRACAVSGNPSFFRNMVWLTEKGSNYPVAKGSYNNTSGEQMLIIWGVHHPNDETEQRTLYQNVGTYVSVGTSTLNKRSTPEIATRPKVNGQGGRMEFSWTLLDMWDTINFESTGNLIAPEYGFKISKRGSSGIMKTEGTLENCETKCQTPLGAINTTLPFHNVHPLTIGECPKYVKSEKLVLATGLRNVPQI  326
                                    18        28        38        48     |  57        67        77    |   86       95A       105       115 |||   122||     133       143       153       163       173       183       193       203       213       223       233       243       253       263|      272       282       292       302       312       322    
                                                                       53A                          81A            95A                  116A||    123|                                                                                                                                       263A                                                               
                                                                                                                                         116B|     125                                                                                                                                                                                                          
                                                                                                                                          116C                                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:168
                                                                                                                                                                                                         
               SCOP domains d4hlzb_ B: Influenza hemagglutinin (stalk)                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4hlz B    1 GLFGAIAGFIEGGWQGMVDGWYGYHHSNDQGSGYAADKESTQKAFDGITNKVNSVIEKMNTVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRMQLRDNVKELGNGCFEFYHKCDDECMNSVKNGTYDYPKYEEESKLNRNE  172
                                    10        20        30        40        50        60||      74        84        94       104       114       124       134       144       154       164        
                                                                                       61|                                                                                                          
                                                                                        66                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4hlzc_ C: Hemagglutinin                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee.......ee.......ee...eee.ee......eeee.....ee....hhhhhhhhhhhhhhhh.......eee...........eee.hhhhhhhhhh.eeeeeeee...............eeeeee..eee....eee..........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeeeeee....eee....eeeeee.eee..ee......ee......ee...ee......eee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4hlz C    9 PGDQICIGYHANNSTEKVDTILERNVTVTHAKDILEKTHNGKLCKLNGIPPLELGDCSIAGWLLGNPECDRLLSVPEWSYIMEKENPRDGLCYPGSFNDYEELKHLLSSVKHFEKVKILPKDRWTQHTTTGGSRACAVSGNPSFFRNMVWLTEKGSNYPVAKGSYNNTSGEQMLIIWGVHHPNDETEQRTLYQNVGTYVSVGTSTLNKRSTPEIATRPKVNGQGGRMEFSWTLLDMWDTINFESTGNLIAPEYGFKISKRGSSGIMKTEGTLENCETKCQTPLGAINTTLPFHNVHPLTIGECPKYVKSEKLVLATGLRNVPQI  326
                                    18        28        38        48     |  57        67        77    |   86       95A       105       115 |||   122||     133       143       153       163       173       183       193       203       213       223       233       243       253       263|      272       282       292       302       312       322    
                                                                       53A                          81A            95A                  116A||    123|                                                                                                                                       263A                                                               
                                                                                                                                         116B|     125                                                                                                                                                                                                          
                                                                                                                                          116C                                                                                                                                                                                                                  


Chain D from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                           
               SCOP domains d4hlzd_ D: Influenza hemagglutinin (stalk)                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeee....eeeeehhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhhh...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4hlz D    1 GLFGAIAGFIEGGWQGMVDGWYGYHHSNDQGSGYAADKESTQKAFDGITNKVNSVIEKMNTEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRMQLRDNVKELGNGCFEFYHKCDDECMNSVKNGTYDYPKYEEESKLNRNE  172
                                    10        20        30        40        50        60||      72        82        92       102       112       122       132       142       152       162       172
                                                                                       61|                                                                                                            
                                                                                        64                                                                                                            


Chain E from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4hlze_ E: Hemagglutinin                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee.......ee.......ee...eee.ee......eeee.....eeee..hhhhhhhh...............eee...........eee.hhhhhhhhhh....eeeee...............hhhhh..........eee..........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeee.......eee....eeeeee..............ee...........ee......eee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4hlz E    9 PGDQICIGYHANNSTEKVDTILERNVTVTHAKDILEKTHNGKLCKLNGIPPLELGDCSIAGWLLGNPECDRLLSVPEWSYIMEKENPRDGLCYPGSFNDYEELKHLLSSVKHFEKVKILPKDRWTQHTTTGGSRACAVSGNPSFFRNMVWLTEKGSNYPVAKGSYNNTSGEQMLIIWGVHHPNDETEQRTLYQNVGTYVSVGTSTLNKRSTPEIATRPKVNGQGGRMEFSWTLLDMWDTINFESTGNLIAPEYGFKISKRGSSGIMKTEGTLENCETKCQTPLGAINTTLPFHNVHPLTIGECPKYVKSEKLVLATGLRNVPQI  326
                                    18        28        38        48     |  57        67        77    |   86       95A       105       115 |||   122||     133       143       153       163       173       183       193       203       213       223       233       243       253       263|      272       282       292       302       312       322    
                                                                       53A                          81A            95A                  116A||    123|                                                                                                                                       263A                                                               
                                                                                                                                         116B|     125                                                                                                                                                                                                          
                                                                                                                                          116C                                                                                                                                                                                                                  


Chain F from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                             
               SCOP domains d4hlzf_ F: Influenza hemagglutinin (stalk)                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4hlz F    1 GLFGAIAGFIEGGWQGMVDGWYGYHHSNDQGSGYAADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRMQLRDNVKELGNGCFEFYHKCDDECMNSVKNGTYDYPKYEEESKLNRNE  172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  


Chain G from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee...ee....eeeeeee..........eeeeee......eeeeee.hhhhh..eee........eeeee....eeeeeee..hhhhheeeeeee..........ee...eeeee........eeeee............eeeeeeeee.....eeee.hhh....eeeeeeeee..eeeeeeeee.hhhhh.....eeeee......eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4hlz G    1 EVKLVESGGGLVQPGGSLRLSCGTSGFTLTDDYMTWVRQPPGKALEWLGFIRDRANGYTTEYSASVKGRFTISRDNSQSIVYLQMNTLRVEDSATYYCARPKGYFPYAMDYWGQGTSVIVSSTKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRG  214
                                    10        20        30        40        50  |||   57        67        77     |||84        94      |101       111       121       131       141       151       161       171       181       191       201       211   
                                                                              52A||                            82A||               100A||                                                                                                                  
                                                                               52B|                             82B|                100B|                                                                                                                  
                                                                                52C                              82C                 100C                                                                                                                  


Chain H from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                    
               SCOP domains d4hlzh1 H:3-109 automated matches                                                                          d4hlzh2 H:110-213 automated matches                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee...........eeeee.......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4hlz H    3 DIQMTQSPASQSASLGESVTITCLASQTIGTWLAWYQQKPGKSPQLLIYAATSLADGVPSRFSGSGSGTKFSFKISSLQAEDFVSYYCQQLYSTPWTFGGGTRLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR  213
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212 


Chain I from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..........eeeeee..........eeeeee......eeeeee........eee.......eeeeee....eeeeee...hhhhheeeeeee..........ee...eee..........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeeee.........eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4hlz I    2 VKLVESGGGLVQPGGSLRLSCGTSGFTLTDDYMTWVRQPPGKALEWLGFIRDRANGYTTEYSASVKGRFTISRDNSQSIVYLQMNTLRVEDSATYYCARPKGYFPYAMDYWGQGTSVIVSSTKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR  213
                                    11        21        31        41        51 |||    58        68        78    ||| 85        95     ||102       112       122       132       142       152       162       172       182       192       202       212 
                                                                             52A||                            82A||               100A||                                                                                                                 
                                                                              52B|                             82B|                100B|                                                                                                                 
                                                                               52C                              82C                 100C                                                                                                                 


Chain J from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                     
               SCOP domains d4hlzj1 J:3-109 automated matches                                                                          d4hlzj2 J:110-214 automated matches                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee.....eeeeee...ee.......eeee....eeeeee...hhhhh.eeeeee......ee...eeeee.......eeeee..hhhhhhhheeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhhh.eeeeeee.......eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4hlz J    3 DIQMTQSPASQSASLGESVTITCLASQTIGTWLAWYQQKPGKSPQLLIYAATSLADGVPSRFSGSGSGTKFSFKISSLQAEDFVSYYCQQLYSTPWTFGGGTRLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN  214
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212  


Chain K from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                         
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.........eeeeeeeee........eeeeee......eeeeee.hhhhh..eee.......eeeeee....eeeeeee..hhhhheeeeeee..........ee...eee..........ee..eeeee.....eee.........eeeeeeeee..eeeeeeee.............eeee......eeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4hlz K    1 EVKLVESGGGLVQPGGSLRLSCGTSGFTLTDDYMTWVRQPPGKALEWLGFIRDRANGYTTEYSASVKGRFTISRDNSQSIVYLQMNTLRVEDSATYYCARPKGYFPYAMDYWGQGTSVIVSSTKTTAPSVYCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDK  208
                                    10        20        30        40        50  |||   57        67        77     |||84        94      |101       111       121||     148       158       168       178       188       198       208
                                                                              52A||                            82A||               100A||                   122|                                                                    
                                                                               52B|                             82B|                100B|                    140                                                                    
                                                                                52C                              82C                 100C                                                                                           


Chain L from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                              
               SCOP domains d4hlzl1 L:3-109 automated matches                                                                          d4hlzl2 L:110-214 automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee........eeeee.....eeeeee...ee.......eeeeee..eeeeee.........eeeee............eeeee.......eeeee..hhhhhh...eeeeeeeeee.....eeeee..eeeee.........eeeeeeeee...........eeeee.......eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4hlz L    3 DIQMTQSPASQSASLGESVTITCLASQTIGTWLAWYQQKPGKSPQLLIYAATSLADGVPSRFSGSGSGTKFSFKISSLQAEDFVSYYCQQLYSTPWTFGGGTRLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN  214
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       159       169       179       189       199       209     
                                                                                                                                                                              151|                                                       
                                                                                                                                                                               159
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 12)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Coiled coil proteins (689)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HLZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HLZ)

(-) Gene Ontology  (17, 17)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        C7S226_I57A0 | C7S226: 3ku3 3ku5 3ku6 3qqb 3qqe 3qqi 3qqo 4hf5

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4HLZ)