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(-) Description

Title :  STRUCTURE OF THE ECFA-A' HETERODIMER BOUND TO ADP
 
Authors :  D. N. Wang, N. K. Karpowich
Date :  17 Oct 12  (Deposition) - 06 Feb 13  (Release) - 27 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Membrane Transport, Vitamin Uptake, Energy Coupling Factor Transporter, Atpase, Atp-Binding Casette, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. K. Karpowich, D. N. Wang
Assembly And Mechanism Of A Group Ii Ecf Transporter.
Proc. Natl. Acad. Sci. Usa V. 110 2534 2013
PubMed-ID: 23359690  |  Reference-DOI: 10.1073/PNAS.1217361110

(-) Compounds

Molecule 1 - PUTATIVE ABC TRANSPORTER ATP-BINDING PROTEIN TM_0222
    Chains: A, B
    EC Number: 3.6.3.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PACYC-DUET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: T7
    Gene: TM0222, TM_0222
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 243274
    Strain: MSB8
 
Molecule 2 - ENERGY-COUPLING FACTOR TRANSPORTER ATP-BINDING PROTEIN ECFA
    Chains: D, C
    EC Number: 3.6.3.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: T7
    Gene: CBIO, ECFA, TM1663, TM_1663
    Mutation: YES
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 243274
    Strain: MSB8
    Synonym: ECF TRANSPORTER A COMPONENT ECFA

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric Unit (2, 9)
No.NameCountTypeFull Name
1ACT5Ligand/IonACETATE ION
2ADP4Ligand/IonADENOSINE-5'-DIPHOSPHATE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:12 , HIS A:13 , LYS A:20 , ASN A:41 , THR A:42 , GLY A:43 , SER A:44 , GLY A:45 , LYS A:46 , SER A:47 , THR A:48BINDING SITE FOR RESIDUE ADP A 301
2AC2SOFTWAREGLU A:164 , PRO A:165 , LEU A:166 , VAL A:167 , SER A:195BINDING SITE FOR RESIDUE ACT A 302
3AC3SOFTWARETYR D:1012 , VAL D:1017 , LYS D:1036 , ASN D:1037 , GLY D:1038 , SER D:1039 , GLY D:1040 , LYS D:1041 , THR D:1042 , THR D:1043 , HOH D:1419BINDING SITE FOR RESIDUE ADP D 1301
4AC4SOFTWAREGLU D:1157 , PRO D:1158 , VAL D:1159 , SER D:1160 , THR D:1188 , HIS D:1189 , GLU D:1190BINDING SITE FOR RESIDUE ACT D 1302
5AC5SOFTWAREPHE B:12 , ASN B:41 , THR B:42 , GLY B:43 , SER B:44 , GLY B:45 , LYS B:46 , SER B:47 , THR B:48 , HOH B:404 , HOH B:408BINDING SITE FOR RESIDUE ADP B 301
6AC6SOFTWAREGLU B:164 , PRO B:165 , LEU B:166 , VAL B:167 , SER B:195 , HIS B:196BINDING SITE FOR RESIDUE ACT B 302
7AC7SOFTWARETYR C:1012 , VAL C:1017 , ASN C:1037 , GLY C:1038 , SER C:1039 , GLY C:1040 , LYS C:1041 , THR C:1042 , THR C:1043BINDING SITE FOR RESIDUE ADP C 1301
8AC8SOFTWAREGLU C:1157 , PRO C:1158 , VAL C:1159 , SER C:1160 , THR C:1188 , HIS C:1189 , HOH C:1401BINDING SITE FOR RESIDUE ACT C 1302
9AC9SOFTWAREGLY C:1135 , GLN C:1136 , ARG C:1139 , LEU C:1162BINDING SITE FOR RESIDUE ACT C 1303

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:264 -D:1237
2B:264 -C:1237

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu D:1103 -Asp D:1104
2Leu C:1103 -Asp C:1104

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HLU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HLU)

(-) Exons   (0, 0)

(no "Exon" information available for 4HLU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee.......eeeeeeeeeee....eeeee.....hhhhhhhhhh........eeee.....hhhhhhhheeee..hhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhh.eeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4hlu A    1 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRRLVLKGEDPFSMSDDELLERVCN  265
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260     


Chain B from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee.......eeeeeeeeeee....eeeee.....hhhhhhhhhh........eeee.....hhhhhhh.eeee..hhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhh.eeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4hlu B    1 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRRLVLKGEDPFSMSDDELLERVCN  265
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260     


Chain C from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                          
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee....eeeeeeeeeee...eeeee.....hhhhhhhhhhh....eeeeee..ee.hhhhhhhheeee...........hhhhhhhh..........hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhh...eeeee..hhhhh....eeeeee..eeeeeehhhhhhhhh......hhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4hlu C  999 GSGRIELNSVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVEREFDDVEIPFKWKLWKKCGKINLWEDRY 1247
                                  1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198      1208      1218      1228      1238         


Chain D from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                      
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee..ee....eee......ee...eeeee.....hhhhhhhhhhh........ee..ee.hhhhhhhheeee...........hhhhhhhh..........hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhh...eeeee..hhhhh....eeeeee..eeeeeehhhhhhhhh......hhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4hlu D  999 GSGRIVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVEREFDDVEIPFKWKLWKKCGKINLWEDRY 1247
                                ||1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212      1222      1232      1242     
                             1003|                                                                                                                                                                                                                                               
                              1008
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HLU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HLU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HLU)

(-) Gene Ontology  (10, 19)

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  4hlu
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  ECFA2_THEMA | Q9WY65
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ECFA1_THEMA | Q9X1Z1: 4zir
        ECFA2_THEMA | Q9WY65: 2yz2 4zir

(-) Related Entries Specified in the PDB File

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