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(-) Description

Title :  RE-REFINEMENT OF THE VAULT RIBONUCLEOPROTEIN PARTICLE
 
Authors :  A. Casanas, J. Querol-Audi, P. Guerra, J. Pous, H. Tanaka, T. Tsukihara V. Verdaguer, I. Fita
Date :  16 Oct 12  (Deposition) - 05 Jun 13  (Release) - 05 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (39x)
Keywords :  9 Repeat Domains, Protein-Protein Complex, Ribonucleoprotein, Structural Protein, Cytoplasmic (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Casanas, J. Querol-Audi, P. Guerra, J. Pous, H. Tanaka, T. Tsukihara, N. Verdaguer, I. Fita
New Features Of Vault Architecture And Dynamics Revealed By Novel Refinement Using The Deformable Elastic Network Approach.
Acta Crystallogr. , Sect. D V. 69 1054 2013
PubMed-ID: 23695250  |  Reference-DOI: 10.1107/S0907444913004472

(-) Compounds

Molecule 1 - MAJOR VAULT PROTEIN
    Chains: A
    Organism Common: BROWN RAT,RAT,RATS
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: MVP

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (39x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4HL8)

(-) Sites  (0, 0)

(no "Site" information available for 4HL8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HL8)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:31 -Pro A:32
2Gly A:147 -Pro A:148

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HL8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HL8)

(-) Exons   (0, 0)

(no "Exon" information available for 4HL8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:782
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeee....eeeeee.................ee.eee...ee...................................eeee............ee.......eeeeeee...ee.....ee......eee..........eeeeeeee.......eeeeeee...ee.....ee....ee.............eeeeeeee.ee....eeeeeee...ee.....ee....eeee......ee.....eeeeeeeeeee....eeeeee.............eeeee...eee.....ee....ee.eee....eeeeee...................eeee...eee.....eeeeeee.........eeeeee....eeeeee.........eee.......hhhhhh...........eee....eeeeeee....eeeeee...eee....eee..eeeee....eeeeeee..ee.......eeeeee.....eeeeee..eeee......hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh............ee.....eeeee......ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hl8 A   5 EAIIRIPPYHYIHVLDQNSNVSRVEVGPKTYIRQDNERVLFAPVRMVTVPPRHYCIVANPVSRDTQSSVLFDITGQVRLRHADQEIRLAQDPFPLYPGEVLEKDITPLQVVLPNTALHLKALLDFEDKNGDKVMAGDEWLFEGPGTYIPQKEVEVVEIIQATVIKQNQALRLRARKECFDREGKGRVTGEEWLVRSVGAYLPAVFEEVLDLVDAVILTEKTALHLRALQNFRDLRGVLHRTGEEWLVTVQDTEAHVPDVYEEVLGVVPITTLGPRHYCVILDPMGPDGKNQLGQKRVVKGEKSFFLQPGERLERGIQDVYVLSEQQGLLLKALQPLEEGESEEKVSHQAGDCWLIRGPLEYVPSAKVEVVEERQAIPLDQNEGIYVQDVKTGKVRAVIGSTYMLTQDEVLWEKELPSGVEELLNSAPRNKTRVVSYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPEEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGP 815
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424   ||  454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604    || 623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                 428|                                                                                                                                                             609|                                                                                                                                                                                                    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                  449                                                                                                                                                              619
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HL8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HL8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HL8)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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  Ligands, Modified Residues, Ions
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  Sites
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  Cis Peptide Bonds
    Gly A:147 - Pro A:148   [ RasMol ]  
    Gly A:31 - Pro A:32   [ RasMol ]  
 
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  4hl8
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  MVP_RAT | Q62667
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MVP_RAT | Q62667: 2qzv 4v60

(-) Related Entries Specified in the PDB File

2zuo 3gnf