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(-) Description

Title :  CRYSTAL STRUCTURE OF NICOTINATE PHOSPHORIBOSYLTRANSFERASE (TARGET NYSGR-026035) FROM VIBRIO CHOLERAE
 
Authors :  A. M. Mulichak, J. M. Sauder, L. J. Keefe, S. K. Burley, S. C. Almo, New Yo Structural Genomics Research Consortium (Nysgrc)
Date :  16 Oct 12  (Deposition) - 14 Nov 12  (Release) - 14 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (2x)
Keywords :  Structural Genomics, Protein Structure Initiative, New York Structural Genomics Research Consortium, Nysgrc, Glycosyltransferase, Nicotinate Ribonucleotide Binding, Psi-Biology, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Mulichak, J. M. Sauder, L. J. Keefe, S. K. Burley, S. C. Almo
Crystal Structure Of Nicotinate Phosphoribosyltransferase (Target Nysgr-026035) From Vibrio Cholerae
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NICOTINATE PHOSPHORIBOSYLTRANSFERASE
    Chains: A, B
    EC Number: 2.4.2.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PNCB, VC_A0098
    Organism Scientific: VIBRIO CHOLERAE
    Organism Taxid: 243277
    Strain: O1 BIOVAR EL TOR N16961
    Synonym: NAPRTASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 21)

Asymmetric Unit (2, 21)
No.NameCountTypeFull Name
1MSE18Mod. Amino AcidSELENOMETHIONINE
2SO43Ligand/IonSULFATE ION
Biological Unit 1 (2, 10)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 11)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION
Biological Unit 3 (2, 42)
No.NameCountTypeFull Name
1MSE36Mod. Amino AcidSELENOMETHIONINE
2SO46Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:324 , GLY A:350 , THR A:351 , HOH A:663 , HOH A:691 , HOH A:945BINDING SITE FOR RESIDUE SO4 A 501
2AC2SOFTWAREARG B:188 , SER B:324 , GLY B:326 , GLY B:350 , THR B:351 , HOH B:740 , HOH B:757 , HOH B:860BINDING SITE FOR RESIDUE SO4 B 501
3AC3SOFTWAREARG A:69 , ARG B:69BINDING SITE FOR RESIDUE SO4 B 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HL7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HL7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HL7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HL7)

(-) Exons   (0, 0)

(no "Exon" information available for 4HL7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:422
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhhhhhhhh...eeeeeeeee....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhh....hhhhheeeeee..eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.....eee.......hhhhhhhhhhhhhhhh...eeee.hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee....hhhhhhhhhhhhhhhhh.eeee...hhhhhhhhhhhhhhhh..hhhh.eeee....hhhhhhhhhhhhh...eeeeeehhhhhh................eeeeeeeee..ee......hhhhh...hhhhhhhhhhhh....hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hl7 A   3 LNPRLFSPHIIRSLLDLDAYKINmmQAIHHFYPDVSVRYELIVRSEEDASGLLDAIRQEIAHLGTLRFSDADIHYLTQHAPHLKATFLQSLRYFHFVPQEQVEmGIVKQQLRISIRGSWRDTILYETLVmAIVSEVRSRQRWAEVPADLPLKVLKTKLDQLKAEIERRGINNFSLTEmGTRRRFSSQVQRDVLACLKQEIPQWVLGTSNYHFAREFDLKPIGTIAHEWFmGHQALVNERDSQQVALERWLTAFDGmLAIAPTDTLTIDAFLNDFNRHLANAYDGVRHDSGCPFRWGDKmIAHYQQLGIDPTTKLFIFSDGLDFDQALELCEYFAGRVKISFGIGTFLTNDLANWRNAAGVEYRPLSIVIKLAECQGRPVAKISDQPEKAmCEDPIFLANLKRRFNIELDVDALIQELRHQKR 428
                                    12        22   ||   32        42        52        62        72        82        92       102   |   116       126       136       146       156       166       176       186       196       206       216       226       236       246       256     | 266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426  
                                                  26-MSE                                                                         106-MSE|                  136-MSE                                         184-MSE                                             236-MSE                   262-MSE                                    305-MSE                                                                                    396-MSE                            
                                                   27-MSE                                                                             115                                                                                                                                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:423
                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4hl7b1 B:2-150 automated matches                                                                                                                  d4hl7b2 B:151-426 automated matches                                                                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhh..hhhhheeeeee....eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.....eee.......hhhhhhhhhhhhhhhh...eeee.hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee....hhhhhhhhhhhhhhhhh.eeee...hhhhhhhhhhhhhhhh..hhhh.eeee....hhhhhhhhhhhhh...eeeeeehhhhhh.................eeeeeeee..ee......hhhhh...hhhhhhhhhhhh....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hl7 B   2 SLNPRLFSPHIIRSLLDLDAYKINmmQAIHHFYPDVSVRYELIVRSEEDASGLLDAIRQEIAHLGTLRFSDADIHYLTQHAPHLKATFLQSLRYFHFVPQEQVEmGIVKGKQQLRISIRGSWRDTILYETLVmAIVSEVRSRQRWAEVPADLPLKVLKTKLDQLKAEIERRGINNFSLTEmGTRRRFSSQVQRDVLACLKQEIPQWVLGTSNYHFAREFDLKPIGTIAHEWFmGHQALVNERDSQQVALERWLTAFDGmLAIAPTDTLTIDAFLNDFNRHLANAYDGVRHDSGCPFRWGDKmIAHYQQLGIDPTTKLFIFSDGLDFDQALELCEYFAGRVKISFGIGTFLTNDLANWRNAAGVEYRPLSIVIKLAECQGRPVAKISDQPEKAmCEDPIFLANLKRRFNIELDVDALIQELRHQ 426
                                    11        21    ||  31        41        51        61        71        81        91       101    |  113       123       133  |    143       153       163       173       183|      193       203       213       223       233  |    243       253       263       273       283       293       303 |     313       323       333       343       353       363       373       383       393  |    403       413       423   
                                                   26-MSE                                                                         106-MSE|                    136-MSE                                         184-MSE                                             236-MSE                   262-MSE                                    305-MSE                                                                                    396-MSE                          
                                                    27-MSE                                                                             113
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HL7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HL7)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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