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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUTAREDOXIN 1 FROM PLASMODIUM FALCIPARUM (PFGRX1) SOLVED BY S-SAD
 
Authors :  Y. Manickam, A. Sharma
Date :  13 Oct 12  (Deposition) - 25 Dec 13  (Release) - 12 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A
Keywords :  Glutathione, Sulfur-Sad, Active Site, Plasticity, Trx Fold, Redox Enzymes, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Yogavel, T. Tripathi, A. Gupta, M. M. Banday, S. Rahlfs, K. Becker, H. Belrhali, A. Sharma
Atomic Resolution Crystal Structure Of Glutaredoxin 1 From Plasmodium Falciparum And Comparison With Other Glutaredoxins.
Acta Crystallogr. , Sect. D V. 70 91 2014
PubMed-ID: 24419382  |  Reference-DOI: 10.1107/S1399004713025285

(-) Compounds

Molecule 1 - GLUTAREDOXIN
    Chains: A
    EC Number: 1.20.4.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: M15
    Expression System Taxid: 1007065
    Expression System Vector Type: PLASMID
    Gene: GRX1, PFC0271C
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 36329
    Strain: 3D7
    Synonym: GLUTAREDOXIN 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2MPO1Ligand/Ion3[N-MORPHOLINO]PROPANE SULFONIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:9 , TYR A:31 , TYR A:65 , GLU A:68 , PRO A:76 , GLY A:87 , CYS A:88 , ASP A:89 , HOH A:309 , HOH A:315 , HOH A:354BINDING SITE FOR RESIDUE MPO A 201
2AC2SOFTWAREASN A:13 , LYS A:82 , HOH A:435BINDING SITE FOR RESIDUE MPD A 202

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:29 -A:32

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Val A:75 -Pro A:76

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HJM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HJM)

(-) Exons   (0, 0)

(no "Exon" information available for 4HJM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:106
                                                                                                                                          
               SCOP domains d4hjma_ A: automated matches                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhh.eeeee.....hhhhhhhhhhhhhh.....eeee..eeeehhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 4hjm A   6 EAVKKWVNKIIEENIIAVFAKTECPYCIKAISILKGYNLNSHMHVENIEKNPDMANIQAYLKELTGKSSVPRIFINKDVVGGCDDLVKENDEGKLKERLQKLGLVN 111
                                    15        25        35        45        55        65        75        85        95       105
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HJM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HJM)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        Q9NLB2_PLAF7 | Q9NLB2: 4mzb 4mzc 4n0z 4n10 4n11

(-) Related Entries Specified in the PDB File

1kte 3c1r