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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HUMAN GIPR ECD IN COMPLEX WITH GIPG013 FAB AT 3-A RESOLUTION
 
Authors :  C. Madhurantakam, P. Ravn, M. G. Gruetter, R. H. Jackson
Date :  12 Oct 12  (Deposition) - 29 May 13  (Release) - 24 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D,P,Q
Biol. Unit 1:  A,P,Q  (1x)
Biol. Unit 2:  B,C,D  (1x)
Keywords :  Glucagon Receptor Sub-Family Recognition Fold, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Ravn, C. Madhurantakam, S. Kunze, E. Matthews, C. Priest, S. O'Brien, A. Collinson, M. Papworth, M. Fritsch-Fredin, L. Jermutus, L. Benthem, M. Gruetter, R. H. Jackson
Structural And Pharmacological Characterization Of Novel Potent And Selective Monoclonal Antibody Antagonists Of Glucose-Dependent Insulinotropic Polypeptide Receptor.
J. Biol. Chem. V. 288 19760 2013
PubMed-ID: 23689510  |  Reference-DOI: 10.1074/JBC.M112.426288

(-) Compounds

Molecule 1 - GASTRIC INHIBITORY POLYPEPTIDE RECEPTOR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: EXTRA-CELLULAR DOMAIN, UNP RESIDUES 24-138
    Gene: GIPR
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GIP-R, GLUCOSE-DEPENDENT INSULINOTROPIC POLYPEPTIDE RECEPTOR
 
Molecule 2 - GIPG013 FAB, ANTAGONIZING ANTIBODY TO THE GIP RECEPTOR, HEAVY CHAIN
    Chains: P, C
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: CHO
    Expression System Plasmid: PEU
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 3 - GIPG013 FAB, ANTAGONIZING ANTIBODY TO THE GIP RECEPTOR, LIGHT CHAIN
    Chains: Q, D
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: CHO
    Expression System Plasmid: PEU
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDPQ
Biological Unit 1 (1x): A   PQ
Biological Unit 2 (1x):  BCD  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4HJ0)

(-) Sites  (0, 0)

(no "Site" information available for 4HJ0)

(-) SS Bonds  (14, 14)

Asymmetric Unit
No.Residues
1A:70 -A:46
2A:103 -A:61
3A:118 -A:84
4B:70 -B:46
5B:103 -B:61
6B:118 -B:84
7C:96 -C:22
8C:202 -C:146
9D:89 -D:22
10D:196 -D:137
11P:96 -P:22
12P:202 -P:146
13Q:89 -Q:22
14Q:196 -Q:137

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Phe P:152 -Pro P:153
2Glu P:154 -Pro P:155
3Tyr Q:143 -Pro Q:144
4Ser D:1 -Tyr D:2
5Tyr D:143 -Pro D:144
6Gly C:99 -Pro C:100
7Glu C:154 -Pro C:155

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HJ0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HJ0)

(-) Exons   (0, 0)

(no "Exon" information available for 4HJ0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:92
                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh...........ee....ee......eeeeee.......hhhh...eeeeee............hhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 4hj0 A  31 TAGELYQRWERYRRECQETLAAAEPPSGLACNGSFDMYVCWDYAAPNATARASCPWYLPWHHHVAAGFVLRQCGSDGQWGLWRDHTQCENPE 122
                                    40        50        60        70        80        90       100       110       120  


Chain B from PDB  Type:PROTEIN  Length:91
                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh...........ee....ee......eeeeee.......hhhh...eeeeee............hhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 4hj0 B  31 TAGELYQRWERYRRECQETLAAAEPPSGLACNGSFDMYVCWDYAAPNATARASCPWYLPWHHHVAAGFVLRQCGSDGQWGLWRDHTQCENP 121
                                    40        50        60        70        80        90       100       110       120 


Chain C from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee.....eeeeee..........eeeeee.....eeeeeee................eeeeee....eeeeee....hhh.eeeeee...............eeeee........eeee....eeeeeeeeeee.....eeee........eeeeeeee.....eeeeeeeeee......eeeeeehhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hj0 C   3 QLQQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPTFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCAQGPIVGAPTDYWGKGTLVTVSSASTKGPSVFPLAPGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSTQTYICNVNHKPSNTKVDKRV 217
                                    12        22        32        42        52        62        72        82        92       102       112       122       132|      149       159       169       179       189   ||  202       212     
                                                                                                                                                           132|                                                  193|                    
                                                                                                                                                            140                                                   197                    


Chain D from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee......eeeee...........eeeeee......eeee..............ee......eeeee....hhh..eeeeeee......eee....eee.........eeee...hhhhhh..eeeeeee........eeeee..........ee.............eeeeee.hhhh......eeeee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hj0 D   1 SYVLTQPPSASGTPGQRVAISCSGSNSNIGSNTVHWYQQLPGAAPKLLIYSNNQRPSGVPDRFSGSNSGTSASLAISRLQSEDEADYYCAAWDDSLNGVVFGGGTKVTVLQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGVEKTVAPTE 213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200 ||    212 
                                                                                                                                                                                                                                   202|        
                                                                                                                                                                                                                                    205        


Chain P from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...eee.....eeeeee.........eeeeeee.....eeeeeee................eee.......eeeeee....hhh.eeeeeeee.............eeeee........eeee......eeeeeeeeee.....eeee........eee...ee.....eeeeeeeee.......eeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hj0 P   3 QLQQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPTFGTANYAQKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCAQGPIVGAPTDYWGKGTLVTVSSASTKGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSTQTYICNVNHKPSNTKVDKRV 217
                                    12        22        32        42        52        62        72        82        92       102       112       122       132||     148       158       168       178       188    || 201       211      
                                                                                                                                                            133|                                                  193|                    
                                                                                                                                                             140                                                   197                    


Chain Q from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........ee.......eeeeee...........eeeee.....eeeee.............eee.....eeeeee.........eeeeee........ee...eee.........eeeee...hhhh....eeeeeeee.......eeeeee........eee...eee...eeeeeeeeee.hhhhh....eeeeee...eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hj0 Q   1 SYVLTQPPSASGTPGQRVAISCSGSNSNIGSNTVHWYQQLPGAAPKLLIYSNNQRPSGVPDRFSGSNSGTSASLAISRLQSEDEADYYCAAWDDSLNGVVFGGGTKVTVLQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEVEKTVAPTE 213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200||     213
                                                                                                                                                                                                                                  201|        
                                                                                                                                                                                                                                   205
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HJ0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HJ0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HJ0)

(-) Gene Ontology  (26, 26)

Asymmetric Unit(hide GO term definitions)

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  Sites
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  Cis Peptide Bonds
    Glu C:154 - Pro C:155   [ RasMol ]  
    Glu P:154 - Pro P:155   [ RasMol ]  
    Gly C:99 - Pro C:100   [ RasMol ]  
    Phe P:152 - Pro P:153   [ RasMol ]  
    Ser D:1 - Tyr D:2   [ RasMol ]  
    Tyr D:143 - Pro D:144   [ RasMol ]  
    Tyr Q:143 - Pro Q:144   [ RasMol ]  
 
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  4hj0
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 Related Entries

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        GIPR_HUMAN | P48546: 2qkh

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