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(-) Description

Title :  2.4A RESOLUTION STRUCTURE OF BOVINE CYTOCHROME B5 (S71L)
 
Authors :  S. Lovell, K. P. Battaile, S. Parthasarathy, N. Sun, S. Terzyan, X. Zhan M. Rivera, K. Kuczera, D. R. Benson
Date :  11 Oct 12  (Deposition) - 16 Oct 13  (Release) - 16 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Cytochrome B5, Heme, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Parthasarathy, N. Sun, S. Lovell, K. P. Battaile, S. Terzyan, X. Zhang, M. Rivera, K. Kuczera, D. R. Benson
2. 4A Resolution Structure Of Bovine Cytochrome B5 (S71L)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CYTOCHROME B5
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: CYB5A, CYB5
    Mutation: YES
    Organism Common: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1CU4Ligand/IonCOPPER (II) ION
2HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:32 , PHE A:35 , HIS A:39 , PRO A:40 , GLY A:41 , VAL A:45 , LEU A:46 , GLN A:49 , PHE A:58 , VAL A:61 , HIS A:63 , SER A:64 , ALA A:67 , LEU A:71BINDING SITE FOR RESIDUE HEM A 101
2AC2SOFTWAREHIS A:26 , ALA C:3 , VAL C:4BINDING SITE FOR RESIDUE CU A 102
3AC3SOFTWARELEU B:32 , PHE B:35 , HIS B:39 , PRO B:40 , GLY B:41 , VAL B:45 , LEU B:46 , GLN B:49 , ALA B:54 , PHE B:58 , VAL B:61 , HIS B:63 , SER B:64 , LEU B:71 , LYS D:19BINDING SITE FOR RESIDUE HEM B 101
4AC4SOFTWAREHIS B:26BINDING SITE FOR RESIDUE CU B 102
5AC5SOFTWARELEU C:32 , PHE C:35 , HIS C:39 , PRO C:40 , GLY C:41 , LEU C:46 , PHE C:58 , VAL C:61 , HIS C:63 , SER C:64 , ALA C:67 , LEU C:71 , PHE C:74BINDING SITE FOR RESIDUE HEM C 101
6AC6SOFTWAREHIS C:26 , ALA D:3 , VAL D:4BINDING SITE FOR RESIDUE CU C 102
7AC7SOFTWARELEU D:23 , PHE D:35 , HIS D:39 , PRO D:40 , GLY D:41 , LEU D:46 , GLN D:49 , ALA D:54 , PHE D:58 , VAL D:61 , HIS D:63 , SER D:64 , ALA D:67 , LEU D:71 , HOH D:206BINDING SITE FOR RESIDUE HEM D 101
8AC8SOFTWAREHIS D:26BINDING SITE FOR RESIDUE CU D 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HIN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HIN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HIN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HIN)

(-) Exons   (0, 0)

(no "Exon" information available for 4HIN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:81
                                                                                                                
               SCOP domains d4hina_ A: automated matches                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eehhhhhh........eeee..eeee...hhhhh..hhhhhhhhh.eehhhhhhhhh.hhhhhhhhhh.eeeee.hhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  4hin A  4 VKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELLKTFIIGELHPDDR 84
                                    13        23        33        43        53        63        73        83 


Chain B from PDB  Type:PROTEIN  Length:82
                                                                                                                 
               SCOP domains d4hinb_ B: automated matches                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eehhhhhh........eeee..eeee...hhhhh..hhhhhhhhh.eehhhhhhhhh.hhhhhhhhhh.eeeee.hhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  4hin B  3 AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELLKTFIIGELHPDDR 84
                                    12        22        32        42        52        62        72        82  


Chain C from PDB  Type:PROTEIN  Length:82
                                                                                                                 
               SCOP domains d4hinc_ C: automated matches                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eehhhhhh........eeee..eeee...hhhhh..hhhhhhhhh.eehhhhhhhhh.hhhhhhhhhh.eeeee.hhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  4hin C  3 AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELLKTFIIGELHPDDR 84
                                    12        22        32        42        52        62        72        82  


Chain D from PDB  Type:PROTEIN  Length:82
                                                                                                                 
               SCOP domains d4hind_ D: automated matches                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eehhhhhh........eeee..eeee...hhhhh..hhhhhhhhh.eehhhhhhhhh.hhhhhhhhhh.eeeee.hhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  4hin D  3 AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELLKTFIIGELHPDDR 84
                                    12        22        32        42        52        62        72        82
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HIN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HIN)

(-) Gene Ontology  (13, 13)

Asymmetric Unit(hide GO term definitions)

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  4hin
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  CYB5_BOVIN | P00171
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UniProtKB/Swiss-Prot
        CYB5_BOVIN | P00171: 1cyo 1ehb 1es1 1f03 1f04 1hko 1i5u 1j0q 1lqx 1lr6 1m20 1m2i 1m2m 1m59 1nx7 1sh4 1u9m 1u9u 3ozz

(-) Related Entries Specified in the PDB File

4hil