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(-) Description

Title :  1.2 STRUCTURE OF INTEGRIN-LINKED KINASE ANKYRIN REPEAT DOMAIN IN COMPLEX WITH PINCH1 LIM1 DOMAIN COLLECTED AT WAVELENGTH 0.91974
 
Authors :  A. L. Stiegler, J. Jakoncic, V. Stojanoff, B. P. Chiswell, D. A. Calderw T. J. Boggon
Date :  11 Oct 12  (Deposition) - 11 Dec 13  (Release) - 11 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ankyrin Repeat Lim Domain, Signaling Protein-Signaling Protein Complex, Ilk-Pinch, Focal Adhesion, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. L. Stiegler, J. Jakoncic, V. Stojanoff, B. P. Chiswell, D. A. Calderwood, T. J. Boggon
1. 2 Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Collected At Wavelength 0. 91974
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - INTEGRIN-LINKED PROTEIN KINASE
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX4T-1
    Expression System Strain: ROSETTA
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: ANKYRIN REPEAT DOMAIN
    Gene: ILK, ILK1, ILK2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 59 KDA SERINE/THREONINE-PROTEIN KINASE, ILK-1, ILK-2, P59ILK
 
Molecule 2 - LIM AND SENESCENT CELL ANTIGEN-LIKE-CONTAINING DOMAIN PROTEIN 1
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: MODIFIED PET32
    Expression System Strain: ROSETTA
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: LIM1 DOMAIN
    Gene: LIMS1, PINCH, PINCH1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PARTICULARLY INTERESTING NEW CYS-HIS PROTEIN 1, PINCH-1, RENAL CARCINOMA ANTIGEN NY-REN-48

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 13)

Asymmetric/Biological Unit (3, 13)
No.NameCountTypeFull Name
1IOD10Ligand/IonIODIDE ION
2PO41Ligand/IonPHOSPHATE ION
3ZN2Ligand/IonZINC ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:43 , SER A:76 , HIS A:77 , HOH A:314 , HOH A:317 , GLN B:40 , ARG B:56 , TYR B:58 , HOH B:205BINDING SITE FOR RESIDUE PO4 A 201
02AC2SOFTWAREGLN A:114BINDING SITE FOR RESIDUE IOD A 202
03AC3SOFTWAREHOH A:381BINDING SITE FOR RESIDUE IOD A 203
04AC4SOFTWARETHR A:167 , IOD B:104BINDING SITE FOR RESIDUE IOD A 204
05AC5SOFTWARETRP A:110 , HOH A:402BINDING SITE FOR RESIDUE IOD A 205
06AC6SOFTWARESER A:47 , ASP A:81 , HOH A:445BINDING SITE FOR RESIDUE IOD A 207
07AC7SOFTWAREASP A:81BINDING SITE FOR RESIDUE IOD A 208
08AC8SOFTWAREHOH A:365 , HOH A:366BINDING SITE FOR RESIDUE IOD A 209
09AC9SOFTWARECYS B:10 , CYS B:13 , HIS B:32 , CYS B:35BINDING SITE FOR RESIDUE ZN B 101
10BC1SOFTWARECYS B:38 , CYS B:41 , CYS B:59 , ASP B:62BINDING SITE FOR RESIDUE ZN B 102
11BC2SOFTWARELYS B:57BINDING SITE FOR RESIDUE IOD B 103
12BC3SOFTWAREPHE A:168 , IOD A:204BINDING SITE FOR RESIDUE IOD B 104

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HI9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HI9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HI9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HI9)

(-) Exons   (0, 0)

(no "Exon" information available for 4HI9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:168
                                                                                                                                                                                                        
               SCOP domains d4hi9a_ A: automated matches                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hi9 A   3 DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTFWK 170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162        


Chain B from PDB  Type:PROTEIN  Length:72
                                                                                                        
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee....................eeeee..eeee............hhhhh.eee..eeehhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 4hi9 B  -3 SENLYFQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA  68
                                     6        16        26        36        46        56        66
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HI9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HI9)

(-) Gene Ontology  (90, 100)

Asymmetric/Biological Unit(hide GO term definitions)

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  ILK_HUMAN | Q13418
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  LIMS1_HUMAN | P48059
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ILK_HUMAN | Q13418: 2kbx 3f6q 3ixe 3kmu 3kmw 3rep 4hi8
        LIMS1_HUMAN | P48059: 1g47 1nyp 1u5s 2cor 2d8x 2kbx 3f6q 4hi8

(-) Related Entries Specified in the PDB File

3f6q 4hi8