4HI4 - JenaLib

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Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE 5-COORDINATE FERRIC HEME-BINDING PAS DOMAIN OF AER2 FROM P. AERUGINOSA

Authors :   M. V. Airola, B. R. Crane

Date :   11 Oct 12 (Deposition) - 09 Jan 13 (Release) - 22 May 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,D,G
Biol. Unit 1: B,D  (1x)
Biol. Unit 2: A (1x),G (1x)
Biol. Unit 3: A  (1x)
Biol. Unit 4: B  (1x)
Biol. Unit 5: D  (1x)
Biol. Unit 6: G  (1x)

Keywords :   Pas Domain, Diatomic Gas Sensor, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. V. Airola, D. Huh, N. Sukomon, J. Widom, R. Sircar, P. P. Borbat, J. H. Freed, K. J. Watts, B. R. Crane
Architecture Of The Soluble Receptor Aer2 Indicates An In-Line Mechanism For Pas And Hamp Domain Signaling.
J. Mol. Biol. V. 425 886 2013
PubMed-ID: 23274111 | Reference-DOI: 10.1016/J.JMB.2012.12.011

Molecule 1 - AEROTAXIS TRANSDUCER AER2
	Chains	:	A, B, D, G
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	HEME-BINDING PAS DOMAIN (UNP RESIDUES 174-289)
	Gene	:	AER2
	Mutation	:	YES
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	287

		1	2	3	4
Asymmetric Unit	:	A	B	D	G
Biological Unit 1 (1x)	:		B	D
Biological Unit 2 (1x)	:	A (1x)			G (1x)
Biological Unit 3 (1x)	:	A
Biological Unit 4 (1x)	:		B
Biological Unit 5 (1x)	:			D
Biological Unit 6 (1x)	:				G

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 9)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	GOL	4	Ligand/Ion	GLYCEROL
3	HEM	4	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	2	Ligand/Ion	GLYCEROL
3	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	2	Ligand/Ion	GLYCEROL
3	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	-1	Ligand/Ion	GLYCEROL
3	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 4 (2, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	1	Ligand/Ion	GLYCEROL
3	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 5 (2, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	1	Ligand/Ion	GLYCEROL
3	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 6 (2, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	2	Ligand/Ion	GLYCEROL
3	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	MET A:187 , ILE A:195 , PHE A:233 , HIS A:234 , LYS A:235 , HIS A:239 , GLN A:240 , HIS A:251 , ALA A:253 , LEU A:255 , LEU A:257 , VAL A:281	BINDING SITE FOR RESIDUE HEM A 301
2	AC2	SOFTWARE	ASP A:231 , HIS A:234 , GLU G:254 , SER G:263 , ARG G:286	BINDING SITE FOR RESIDUE CL A 302
3	AC3	SOFTWARE	MET B:187 , ILE B:195 , PHE B:233 , HIS B:234 , LYS B:235 , HIS B:239 , GLN B:240 , HIS B:251 , ALA B:253 , LEU B:255 , LEU B:257 , VAL B:281	BINDING SITE FOR RESIDUE HEM B 301
4	AC4	SOFTWARE	LEU B:179	BINDING SITE FOR RESIDUE GOL B 302
5	AC5	SOFTWARE	PRO B:218 , ILE D:195 , ILE D:230 , PHE D:233 , HIS D:234 , LYS D:235 , GLN D:240 , LEU D:244 , HIS D:251 , ALA D:253 , LEU D:255 , LEU D:257 , VAL D:281	BINDING SITE FOR RESIDUE HEM D 301
6	AC6	SOFTWARE	HIS D:171 , ILE D:175 , VAL D:269 , PHE D:270 , HOH D:413	BINDING SITE FOR RESIDUE GOL D 302
7	AC7	SOFTWARE	ILE G:195 , ILE G:230 , PHE G:233 , HIS G:234 , LYS G:235 , GLN G:240 , LEU G:244 , HIS G:251 , ALA G:253 , LEU G:255 , LEU G:257 , VAL G:281	BINDING SITE FOR RESIDUE HEM G 301
8	AC8	SOFTWARE	GLN A:282 , ALA G:184	BINDING SITE FOR RESIDUE GOL G 302
9	AC9	SOFTWARE	ILE G:175 , LEU G:179	BINDING SITE FOR RESIDUE GOL G 303

(no "SS Bond" information available for 4HI4)

Asymmetric Unit

No.	Residues
1	Gly B:169	-	Ser B:170

(no "SAP(SNP)/Variant" information available for 4HI4)

(no "PROSITE Motif" information available for 4HI4)

(no "Exon" information available for 4HI4)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:119
                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh....eeeeee....eeeehhhhhhhhhhhhhhhhhhh...hhhhh...hhhhhh.hhhhhhhhhhhh...eeeeeee..eeeeeeeeeee.....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 4hi4 A 169 GSHMARIASALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNPAHQRHLLANLTGVHKAELNLGGRRFSLDVVPVFNDANARLGSAVQWTDRT 287
                                   178       188       198       208       218       228       238       248       258       268       278

Chain B from PDB  Type:PROTEIN  Length:119
                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh....eeeeee....eeeehhhhhhhhhhhhhhhhhhh...hhhhh...hhhhhh.hhhhhhhhhhhh...eeeeeee..eeeeeeeeeee.....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 4hi4 B 169 GSHMARIASALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNPAHQRHLLANLTGVHKAELNLGGRRFSLDVVPVFNDANARLGSAVQWTDRT 287
                                   178       188       198       208       218       228       238       248       258       268       278

Chain D from PDB  Type:PROTEIN  Length:119
                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh....eeeeee....eeeehhhhhhhhhhhhhhhhh.....hhhhh...hhhhhh.hhhhhhhhhhhh...eeeeeee..eeeeeeeeeee.....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 4hi4 D 169 GSHMARIASALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNPAHQRHLLANLTGVHKAELNLGGRRFSLDVVPVFNDANARLGSAVQWTDRT 287
                                   178       188       198       208       218       228       238       248       258       268       278

Chain G from PDB  Type:PROTEIN  Length:119
                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh....eeeeee....eeeehhhhhhhhhhhhhhhhh.....hhhhh...hhhhhh.hhhhhhhhhhhh...eeeeeee..eeeeeeeeeee.....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 4hi4 G 169 GSHMARIASALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNPAHQRHLLANLTGVHKAELNLGGRRFSLDVVPVFNDANARLGSAVQWTDRT 287
                                   178       188       198       208       218       228       238       248       258       268       278

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4HI4)

(no "CATH Domain" information available for 4HI4)

(no "Pfam Domain" information available for 4HI4)

Asymmetric Unit(hide GO term definitions)

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	Cis Peptide Bonds
		Gly B:169 - Ser B:170	[ RasMol ]

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	Q9I6V6_PSEAE \| Q9I6V6	:	3lnr 3vol 4i3m 4i44

3lnr	N-TERMINAL 3-UNIT POLY-HAMP DOMAIN
3vol	FERRIC CN-COMPLEX OF AER2 PAS DOMAIN

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Ligands, Modified Residues, Ions (3, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

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