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(-) Description

Title :  CRYSTAL STRUCTURE OF FATTY ACID ALPHA-DIOXYGENASE (ARABIDOPSIS THALIANA)
 
Authors :  C. C. Goulah, G. Zhu, M. Koszelak-Rosenblum, M. G. Malkowski
Date :  10 Oct 12  (Deposition) - 20 Feb 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Cyclooxygenase Myeloperoxidase Folding, Fatty Acid Dioxygenase, Calcium Binding, Monotopic Membrane Protein, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. C. Goulah, G. Zhu, M. Koszelak-Rosenblum, M. G. Malkowski
The Crystal Structure Of Alpha-Dioxygenase Provides Insight Into Diversity In The Cyclooxygenase-Peroxidase Superfamily
Biochemistry V. 52 1364 2013
PubMed-ID: 23373518  |  Reference-DOI: 10.1021/BI400013K

(-) Compounds

Molecule 1 - ALPHA-DIOXYGENASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: T13O15.6, ALPHADOX1, AT3G01420/T13O15.6, DOX1, AT3G01420, AT3G01420
    Organism Common: MOUSE-EAR CRESS,THALE-CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: ALPHADOX1 FATTY ACID DIOXYGENASE, FEEBLY-LIKE PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 13)

Asymmetric/Biological Unit (7, 13)
No.NameCountTypeFull Name
1BNG1Ligand/IonB-NONYLGLUCOSIDE
2CA5Ligand/IonCALCIUM ION
3CL3Ligand/IonCHLORIDE ION
4HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
5P6G1Ligand/IonHEXAETHYLENE GLYCOL
6PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
7PGE1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:159 , ASP A:167 , HIS A:168 , ASN A:267 , TRP A:269 , THR A:383 , TYR A:386 , ARG A:387 , MET A:388 , HIS A:389 , LEU A:392 , ILE A:423 , TRP A:459 , LEU A:479 , LEU A:482 , ARG A:486 , ARG A:490 , HOH A:843 , HOH A:865 , HOH A:906 , HOH A:920 , HOH A:949BINDING SITE FOR RESIDUE HEM A 701
02AC2SOFTWAREASP A:164 , THR A:216 , TRP A:218 , ASP A:220 , SER A:222BINDING SITE FOR RESIDUE CA A 702
03AC3SOFTWAREGLU A:518 , GLU A:521 , HOH A:1198BINDING SITE FOR RESIDUE CA A 703
04AC4SOFTWAREASP A:294 , ASP A:296 , HOH A:1065 , HOH A:1234 , HOH A:1268 , HOH A:1347BINDING SITE FOR RESIDUE CA A 704
05AC5SOFTWAREHIS A:318 , TYR A:386 , ARG A:566BINDING SITE FOR RESIDUE CL A 705
06AC6SOFTWARELYS A:316 , TRP A:340 , ASN A:591BINDING SITE FOR RESIDUE CL A 706
07AC7SOFTWAREASP A:622 , HOH A:801 , HOH A:925 , HOH A:998 , HOH A:1130 , HOH A:1212BINDING SITE FOR RESIDUE CA A 707
08AC8SOFTWAREASN A:228 , HOH A:1011BINDING SITE FOR RESIDUE CL A 708
09AC9SOFTWAREHOH A:1254 , HOH A:1374 , HOH A:1505BINDING SITE FOR RESIDUE CA A 709
10BC1SOFTWAREASP A:330 , HOH A:897BINDING SITE FOR RESIDUE PEG A 710
11BC2SOFTWAREVAL A:41BINDING SITE FOR RESIDUE BNG A 711
12BC3SOFTWAREARG A:499 , GLU A:511 , ASP A:512 , LYS A:544 , HOH A:970 , HOH A:1207 , HOH A:1303BINDING SITE FOR RESIDUE P6G A 712
13BC4SOFTWAREGLU A:588 , TRP A:589 , THR A:592 , ARG A:602 , HOH A:1125 , HOH A:1393 , HOH A:1400 , HOH A:1411BINDING SITE FOR RESIDUE PGE A 713

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HHS)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:127 -Pro A:128

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HHS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HHS)

(-) Exons   (0, 0)

(no "Exon" information available for 4HHS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:639
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhh.....................ee.........hhhhh...hhhhhhhhhh............hhhhhhhhhhhhhhhh...eeeeeeeee....hhhhh...eeeeeee..ee.......ee.ee.......hhhhhh.hhhhhhhhh................................hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhh...hhhhhh................hhhhhhhhhhhhhh..eeeee......hhhhh..eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh...............hhhhhhhhhhhhh...hhhhhhhhh......hhhhh..hhhhhhhhhhhh.......hhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhh...................hhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hhs A   1 MKVITSLISSILLKFIHKDFHEIYARMSLLDRFLLLIVHGVDKMVPWHKLPVFLGLTYLEVRRHLHQQYNLLNVGQTPTGIRFDPANYPYRTADGKFNDPFNEGVGSQNSFFGRNCPPVDQKSKLRRPDPMVVATKLLGRKKFIDTGKQFNMIAASWIQFMIHDWIDHLEDTHQIELVAPKEVASKCPLSSFRFLKTKEVPTGFFEIKTGSQNIRTPWWDSSVIYGSNSKTLDRVRTYKDGKLKISEETGLLLHDEDGLAISGDIRNSWAGVSALQALFIKEHNAVCDALKDEDDDLEDEDLYRYARLVTSAVVAKIHTIDWTVQLLKTDTLLAGMRANWYGLLGKKFKDSFGHAGSSILGGVVGMKKPQNHGVPYSLTEDFTSVYRMHSLLPDQLHILDIDDVPGTNKSLPLIQEISMRDLIGRKGEETMSHIGFTKLMVSMGHQASGALELMNYPMWLRDIVPHDPNGQARPDHVDLAALEIYRDRERSVPRYNEFRRSMFMIPITKWEDLTEDEEAIEVLDDVYDGDVEELDLLVGLMAEKKIKGFAISETAFYIFLIMATRRLEADRFFTSDFNETIYTKKGLEWVNTTESLKDVIDRHYPDMTDKWMNSESAFSVWDSPPLTKNPIPLYLRIPS 639
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HHS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HHS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HHS)

(-) Gene Ontology  (27, 27)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:127 - Pro A:128   [ RasMol ]  
 

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 Related Entries

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UniProtKB/Swiss-Prot
        DOX1_ARATH | Q9SGH6: 4hhr

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4hhr