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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TELOMERIC SACCHAROMYCES CEREVISIAE CDC13 OB2 DOMAIN
 
Authors :  M. Mason, J. J. Wannat, S. Harper, D. C. Schultz, D. W. Speicher, F. B. Joh E. Skordalakes
Date :  29 Sep 12  (Deposition) - 28 Nov 12  (Release) - 30 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ob Fold, Oligonucleotide/Oligosaccharide Binding Fold, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Mason, J. J. Wanat, S. Harper, D. C. Schultz, D. W. Speicher, F. B. Johnson, E. Skordalakes
Cdc13 Ob2 Dimerization Required For Productive Stn1 Binding And Efficient Telomere Maintenance.
Structure V. 21 109 2013
PubMed-ID: 23177925  |  Reference-DOI: 10.1016/J.STR.2012.10.012

(-) Compounds

Molecule 1 - CELL DIVISION CONTROL PROTEIN 13
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: CDC13 OB2, UNP RESIDUES 344-495
    Gene: CDC13, YDL220C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4HCE)

(-) Sites  (0, 0)

(no "Site" information available for 4HCE)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:383 -B:383

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Asn A:370 -Pro A:371
2Pro A:397 -Asp A:398
3Asp A:454 -Asn A:455
4Asn B:370 -Pro B:371
5Ser B:460 -Pro B:461
6Asp B:474 -Thr B:475

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HCE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HCE)

(-) Exons   (0, 0)

(no "Exon" information available for 4HCE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh.....eeeeeeeeeeee.....hhhhhh...eeeeee.................eeeee.hhhhhhhhhhhhhhhhhhhhhhhh......eeeeeeeeee.........eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hce A 346 ISYEQLSLASVGSVERLEGKIVGMNPPQFASINEFKYCTLKLYFTQLLPNVPDKVLVPGVNCIEIVIPTRERICELFGVLNCQSDKISDILLLEKPDRISVEVERILWDNDKTASPGMAVWSLKNISTD 474
                                   355       365       375       385       395       405       415       425       435       445       455       465         


Chain B from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh......eeeeeeeeeeee.....hhhhhh...eeeeee.................eeeee.hhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeee.........eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hce B 346 ISYEQLSLASVGSVERLEGKIVGMNPPQFASINEFKYCTLKLYFTQLLPNVPDKVLVPGVNCIEIVIPTRERICELFGVLNCQSDKISDILLLEKPDRISVEVERILWDNDKTASPGMAVWSLKNISTDT 475
                                   355       365       375       385       395       405       415       425       435       445       455       465       475
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HCE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HCE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HCE)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
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  Cis Peptide Bonds
    Asn A:370 - Pro A:371   [ RasMol ]  
    Asn B:370 - Pro B:371   [ RasMol ]  
    Asp A:454 - Asn A:455   [ RasMol ]  
    Asp B:474 - Thr B:475   [ RasMol ]  
    Pro A:397 - Asp A:398   [ RasMol ]  
    Ser B:460 - Pro B:461   [ RasMol ]  
 

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  4hce
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  CDC13_YEAST | P32797
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CDC13_YEAST | P32797: 1kxl 1s40 3nws 3nwt 3oip 3oiq

(-) Related Entries Specified in the PDB File

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