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(-) Description

Title :  DNA BINDING BY GATA TRANSCRIPTION FACTOR-COMPLEX 3
 
Authors :  Y. Chen, D. L. Bates, R. Dey, L. Chen
Date :  28 Sep 12  (Deposition) - 05 Dec 12  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,Y,Z
Biol. Unit 1:  A,Y,Z  (1x)
Biol. Unit 2:  A (1x),Y (1x),Z (1x)
Keywords :  Zinc Finger, Gata Transcription Factor, Dna Bridging, Transcription- Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Chen, D. L. Bates, R. Dey, P. H. Chen, A. C. Machado, I. A. Laird-Offringa, R. Rohs, L. Chen
Dna Binding By Gata Transcription Factor Suggests Mechanism Of Dna Looping And Long-Range Gene Regulation.
Cell Rep V. 2 1197 2012
PubMed-ID: 23142663  |  Reference-DOI: 10.1016/J.CELREP.2012.10.012

(-) Compounds

Molecule 1 - TRANS-ACTING T-CELL-SPECIFIC TRANSCRIPTION FACTOR GATA-3
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 260 -365
    Gene: GATA3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GATA-BINDING FACTOR 3
 
Molecule 2 - DNA (5'- D(*TP*TP*CP*CP*TP*AP*AP*AP*TP*CP*AP*GP*AP*GP*AP*TP*AP*AP*CP*C)-3')
    Chains: Y
    Engineered: YES
    Other Details: THIS SEQUENCE OCCURS NATURALLY IN HUMANS.
    Synthetic: YES
 
Molecule 3 - DNA (5'- D(*AP*AP*GP*GP*TP*TP*AP*TP*CP*TP*CP*TP*GP*AP*TP*TP*TP*AP*GP*G)-3')
    Chains: Z
    Engineered: YES
    Other Details: THIS SEQUENCE OCCURS NATURALLY IN HUMANS.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : AYZ
Biological Unit 1 (1x): AYZ
Biological Unit 2 (1x): A (1x)Y (1x)Z (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:318 , CYS A:321 , CYS A:339 , CYS A:342BINDING SITE FOR RESIDUE ZN A 401
2AC2SOFTWARECYS A:264 , CYS A:267 , CYS A:285 , CYS A:288BINDING SITE FOR RESIDUE ZN A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HC9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HC9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HC9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HC9)

(-) Exons   (0, 0)

(no "Exon" information available for 4HC9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:105
                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............ee.....eehhhhhhhhhhhh.................................ee.....eehhhhhhhhhhhh...hhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 4hc9 A 262 RECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRN 366
                                   271       281       291       301       311       321       331       341       351       361     


Chain Y from PDB  Type:DNA  Length:20
                                                    
                 4hc9 Y   1 TTCCTAAATCAGAGATAACC  20
                                    10        20


Chain Z from PDB  Type:DNA  Length:20
                                                    
                 4hc9 Z   1 AAGGTTATCTCTGATTTAGG  20
                                    10        20
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HC9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HC9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HC9)

(-) Gene Ontology  (154, 154)

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  GATA3_HUMAN | P23771
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GATA3_HUMAN | P23771: 4hc7 4hca

(-) Related Entries Specified in the PDB File

4hc7 4hca