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(-) Description

Title :  CRYSTAL STRUCTURE OF CONJUGATED POLYKETONE REDUCTASE C2 FROM CANDIDA PARAPSILOSIS COMPLEXED WITH NADPH
 
Authors :  H. -M. Qin, A. Yamamura, T. Miyakawa, S. Maruoka, J. Ohtsuka, K. Nagata, M. Kataoka, S. Shimizu, M. Tanokura
Date :  23 Sep 12  (Deposition) - 07 Aug 13  (Release) - 15 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Oxidoreductase, Tim Barrel, D-Pantoyl Lactone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. -M. Qin, A. Yamamura, T. Miyakawa, M. Kataoka, T. Nagai, N. Kitamura N. Urano, S. Maruoka, J. Ohtsuka, K. Nagata, S. Shimizu, M. Tanokura
Structure Of Conjugated Polyketone Reductase From Candida Parapsilosis Ifo 0708 Reveals Conformational Changes For Substrate Recognition Upon Nadph Binding
Appl. Microbiol. Biotechnol. V. 98 243 2014
PubMed-ID: 23828603  |  Reference-DOI: 10.1007/S00253-013-5073-9

(-) Compounds

Molecule 1 - CONJUGATED POLYKETONE REDUCTASE C2
    Chains: A, B
    EC Number: 1.1.1.214
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Strain: ROSETTA(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CPR-C2
    Organism Common: YEAST
    Organism Scientific: CANDIDA PARAPSILOSIS
    Organism Taxid: 5480
    Strain: IFO 0708

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1NDP1Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1NDP1Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:24 , THR A:25 , GLY A:26 , THR A:27 , LYS A:28 , ASP A:58 , TYR A:63 , HIS A:125 , SER A:161 , ASN A:162 , GLN A:186 , PHE A:214 , SER A:215 , PRO A:216 , LEU A:217 , ALA A:221 , ARG A:222 , ALA A:244 , VAL A:259 , THR A:260 , THR A:261 , SER A:262 , SER A:263 , LYS A:264 , ARG A:267 , HOH A:3114 , HOH A:3192 , HOH A:3219 , LYS B:28 , GLU B:224BINDING SITE FOR RESIDUE NDP A 3001
2AC2SOFTWARELYS A:28 , GLU A:224 , GLY B:24 , THR B:25 , GLY B:26 , THR B:27 , LYS B:28 , ASP B:58 , TYR B:63 , LYS B:88 , HIS B:125 , SER B:161 , ASN B:162 , GLN B:186 , PHE B:214 , SER B:215 , PRO B:216 , LEU B:217 , ALA B:221 , ARG B:222 , ALA B:244 , VAL B:259 , THR B:260 , THR B:261 , SER B:262 , SER B:263 , LYS B:264 , ARG B:267 , HOH B:3113 , HOH B:3168BINDING SITE FOR RESIDUE NDP B 3001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4H8N)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4H8N)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H8N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H8N)

(-) Exons   (0, 0)

(no "Exon" information available for 4H8N)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:303
                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4h8na_ A: automated matches                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eee.hhhhh........hhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhh..hhhhheeeeee..ee..ee....hhhhhhhhhhhhhh...eeeeee.............hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhh.hhhhh..eeeee.hhhhh....hhhhhhhhh..eeeee..hhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhh..eeee...hhhhhhhhhh......hhhhhhhhhhhhhh......hhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h8n A   5 NLLPKTFRTKSGKEISIALGTGTKWKQAQTINDVSTELVDNILLGLKLGFRHIDTAEAYNTQKEVGEALKRTDVPREDIWVTTKYSPGWGSIKAYSKSPSDSIDKALAQLGVDYVDLFLIHSPFFTTEQTHGYTLEQAWEALVEAKKAGKVREIGISNAAIPHLEKLFAASPSPEYYPVVNQIEFHPFLQNQSKNIVRFCQEHGILVEAFSPLAPLARVETNALAETLKRLAEKYKKTEAQVLLRYTLQRGILPVTTSSKESRLKESLNLFDFELTDEEVNEINKIGDANPYRAFFHEQFKDL 307
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304   


Chain B from PDB  Type:PROTEIN  Length:298
                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4h8nb_ B: automated matches                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eee.hhhhh....hhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhh..hhhhheeeeee..ee..ee....hhhhhhhhhhhhhh...eeeeee.....hhhhhh..hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhh.hhhhh..eeeee.hhhhh....hhhhhhhhh..eeeee..hhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhh..eeee...hhhhhhhhhh......hhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h8n B   6 LLPKTFRTKSGKEISIALGTGTKWKQAQVSTELVDNILLGLKLGFRHIDTAEAYNTQKEVGEALKRTDVPREDIWVTTKYSPGWGSIKAYSKSPSDSIDKALAQLGVDYVDLFLIHSPFFTTEQTHGYTLEQAWEALVEAKKAGKVREIGISNAAIPHLEKLFAASPSPEYYPVVNQIEFHPFLQNQSKNIVRFCQEHGILVEAFSPLAPLARVETNALAETLKRLAEKYKKTEAQVLLRYTLQRGILPVTTSSKESRLKESLNLFDFELTDEEVNEINKIGDANPYRAFFHEQFKDL 307
                                    15        25       |39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299        
                                                      33|                                                                                                                                                                                                                                                                             
                                                       38
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H8N)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H8N)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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        CPRC2_CANPA | Q76L36: 3vxg

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3vxg